Genomic landscape of high-grade meningiomas

被引:142
作者
Bi, Wenya Linda [1 ,2 ,3 ]
Greenwald, Noah F. [1 ,2 ,3 ]
Abedalthagafi, Malak [4 ,5 ,6 ]
Wala, Jeremiah [2 ,3 ]
Gibson, Will J. [2 ,3 ]
Agarwalla, Pankaj K. [2 ,7 ]
Horowitz, Peleg [8 ]
Schumacher, Steven E. [2 ,3 ]
Esaulova, Ekaterina [9 ,10 ]
Mei, Yu [1 ]
Chevalier, Aaron [3 ]
Ducar, Matthew A. [11 ]
Thorner, Aaron R. [11 ]
van Hummelen, Paul [11 ]
Stemmer-Rachamimov, Anat O. [12 ]
Artyomov, Maksym
Al-Mefty, Ossama [1 ]
Dunn, Gavin P. [13 ,14 ]
Santagata, Sandro [4 ]
Dunn, Ian F. [1 ]
Beroukhim, Rameen [2 ,3 ,15 ]
机构
[1] Harvard Med Sch, Brigham & Womens Hosp, Dept Neurosurg, Ctr Skull Base & Pituitary Surg, Boston, MA 02115 USA
[2] Dana Farber Canc Inst, Dept Canc Biol, Boston, MA 02115 USA
[3] Broad Inst MIT & Harvard, Cambridge, MA 02142 USA
[4] Brigham & Womens Hosp, Dept Pathol, Div Neuropathol, 75 Francis St, Boston, MA 02115 USA
[5] King Fahad Med City, Res Ctr, Riyadh, Saudi Arabia
[6] King Abdulaziz City Sci & Technol, Saudi Human Genome Project Lab, Riyadh, Saudi Arabia
[7] Massachusetts Gen Hosp, Dept Neurosurg, Boston, MA 02114 USA
[8] Univ Chicago, Dept Surg, 5841 S Maryland Ave, Chicago, IL 60637 USA
[9] Washington Univ, Sch Med, Dept Pathol & Immunol, St Louis, MO USA
[10] ITMO Univ, Comp Technol Dept, St Petersburg, Russia
[11] Dana Farber Canc Inst, Ctr Canc Genome Discovery, Boston, MA 02115 USA
[12] Massachusetts Gen Hosp, Dept Pathol, Boston, MA 02114 USA
[13] Washington Univ, Sch Med, Dept Neurosurg, St Louis, MO USA
[14] Washington Univ, Sch Med, Ctr Human Immunol & Immunotherapy Programs, St Louis, MO USA
[15] Dana Farber Canc Inst, Dept Med Oncol, Boston, MA 02115 USA
关键词
TERT PROMOTER MUTATIONS; GENETIC-VARIATION; PD-1; BLOCKADE; CANCER; TUMORS; PREDICTION; EVOLUTION; COMMON; AKT1; IMMUNOGENOMICS;
D O I
10.1038/s41525-017-0014-7
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
High-grade meningiomas frequently recur and are associated with high rates of morbidity and mortality. To determine the factors that promote the development and evolution of these tumors, we analyzed the genomes of 134 high-grade meningiomas and compared this information with data from 595 previously published meningiomas. High-grade meningiomas had a higher mutation burden than low-grade meningiomas but did not harbor any significantly mutated genes aside from NF2. High-grade meningiomas also possessed significantly elevated rates of chromosomal gains and losses, especially among tumors with monosomy 22. Meningiomas previously treated with adjuvant radiation had significantly more copy number alterations than radiation-induced or radiation-naive meningiomas. Across serial recurrences, genomic disruption preceded the emergence of nearly all mutations, remained largely uniform across time, and when present in low-grade meningiomas correlated with subsequent progression to a higher grade. In contrast to the largely stable copy number alterations, mutations were strikingly heterogeneous across tumor recurrences, likely due to extensive geographic heterogeneity in the primary tumor. While high-grade meningiomas harbored significantly fewer overtly targetable alterations than low-grade meningiomas, they contained numerous mutations that are predicted to be neoantigens, suggesting that immunologic targeting may be of therapeutic value.
引用
收藏
页数:14
相关论文
共 66 条
  • [1] Oncogenic PI3K mutations are as common as AKT1 and SMO mutations in meningioma
    Abedalthagafi, Malak
    Bi, Wenya Linda
    Aizer, Ayal A.
    Merrill, Parker H.
    Brewster, Ryan
    Agarwalla, Pankaj K.
    Listewnik, Marc L.
    Dias-Santagata, Dora
    Thorner, Aaron R.
    Van Hummelen, Paul
    Brastianos, Priscilla K.
    Reardon, David A.
    Wen, Patrick Y.
    Al-Mefty, Ossama
    Ramkissoon, Shakti H.
    Folkerth, Rebecca D.
    Ligon, Keith L.
    Ligon, Azra H.
    Alexander, Brian M.
    Dunn, Ian F.
    Beroukhim, Rameen
    Santagata, Sandro
    [J]. NEURO-ONCOLOGY, 2016, 18 (05) : 649 - 655
  • [2] ARID1A and TERT promoter mutations in dedifferentiated meningioma
    Abedalthagafi, Malak S.
    Bi, Wenya Linda
    Merrill, Parker H.
    Gibson, William J.
    Rose, Matthew F.
    Du, Ziming
    Francis, Joshua M.
    Du, Rose
    Dunn, Ian F.
    Ligon, Azra H.
    Beroukhim, Rameen
    Santagata, Sandro
    [J]. CANCER GENETICS, 2015, 208 (06) : 345 - 350
  • [3] Angiomatous meningiomas have a distinct genetic profile with multiple chromosomal polysomies including polysomy of chromosome 5
    Abedalthagafi, Malak S.
    Merrill, Parker H.
    Bi, Wenya Linda
    Jones, Robert T.
    Listewnik, Marc L.
    Ramkissoon, Shakti H.
    Thorner, Aaron R.
    Dunn, Ian F.
    Beroukhim, Rameen
    Alexander, Brian M.
    Brastianos, Priscilla K.
    Francis, Joshua M.
    Folkerth, Rebecca D.
    Ligon, Keith L.
    Van Hummelen, Paul
    Ligon, Azra H.
    Santagata, Sandro
    [J]. ONCOTARGET, 2014, 5 (21) : 10596 - 10606
  • [4] A prognostic cytogenetic scoring system to guide the adjuvant management of patients with atypical meningioma
    Aizer, Ayal A.
    Abedalthagafi, Malak
    Bi, Wenya Linda
    Horvath, Margaret C.
    Arvold, Nils D.
    Al-Mefty, Ossama
    Lee, Eudocia Q.
    Nayak, Lakshmi
    Rinne, Mikael L.
    Norden, Andrew D.
    Reardon, David A.
    Wen, Patrick Y.
    Ligon, Keith L.
    Ligon, Azra H.
    Beroukhim, Rameen
    Dunn, Ian F.
    Santagata, Sandro
    Alexander, Brian M.
    [J]. NEURO-ONCOLOGY, 2016, 18 (02) : 269 - 274
  • [5] Signatures of mutational processes in human cancer
    Alexandrov, Ludmil B.
    Nik-Zainal, Serena
    Wedge, David C.
    Aparicio, Samuel A. J. R.
    Behjati, Sam
    Biankin, Andrew V.
    Bignell, Graham R.
    Bolli, Niccolo
    Borg, Ake
    Borresen-Dale, Anne-Lise
    Boyault, Sandrine
    Burkhardt, Birgit
    Butler, Adam P.
    Caldas, Carlos
    Davies, Helen R.
    Desmedt, Christine
    Eils, Roland
    Eyfjord, Jorunn Erla
    Foekens, John A.
    Greaves, Mel
    Hosoda, Fumie
    Hutter, Barbara
    Ilicic, Tomislav
    Imbeaud, Sandrine
    Imielinsk, Marcin
    Jaeger, Natalie
    Jones, David T. W.
    Jones, David
    Knappskog, Stian
    Kool, Marcel
    Lakhani, Sunil R.
    Lopez-Otin, Carlos
    Martin, Sancha
    Munshi, Nikhil C.
    Nakamura, Hiromi
    Northcott, Paul A.
    Pajic, Marina
    Papaemmanuil, Elli
    Paradiso, Angelo
    Pearson, John V.
    Puente, Xose S.
    Raine, Keiran
    Ramakrishna, Manasa
    Richardson, Andrea L.
    Richter, Julia
    Rosenstiel, Philip
    Schlesner, Matthias
    Schumacher, Ton N.
    Span, Paul N.
    Teague, Jon W.
    [J]. NATURE, 2013, 500 (7463) : 415 - +
  • [6] Integrating common and rare genetic variation in diverse human populations
    Altshuler, David M.
    Gibbs, Richard A.
    Peltonen, Leena
    Dermitzakis, Emmanouil
    Schaffner, Stephen F.
    Yu, Fuli
    Bonnen, Penelope E.
    de Bakker, Paul I. W.
    Deloukas, Panos
    Gabriel, Stacey B.
    Gwilliam, Rhian
    Hunt, Sarah
    Inouye, Michael
    Jia, Xiaoming
    Palotie, Aarno
    Parkin, Melissa
    Whittaker, Pamela
    Chang, Kyle
    Hawes, Alicia
    Lewis, Lora R.
    Ren, Yanru
    Wheeler, David
    Muzny, Donna Marie
    Barnes, Chris
    Darvishi, Katayoon
    Hurles, Matthew
    Korn, Joshua M.
    Kristiansson, Kati
    Lee, Charles
    McCarroll, Steven A.
    Nemesh, James
    Keinan, Alon
    Montgomery, Stephen B.
    Pollack, Samuela
    Price, Alkes L.
    Soranzo, Nicole
    Gonzaga-Jauregui, Claudia
    Anttila, Verneri
    Brodeur, Wendy
    Daly, Mark J.
    Leslie, Stephen
    McVean, Gil
    Moutsianas, Loukas
    Nguyen, Huy
    Zhang, Qingrun
    Ghori, Mohammed J. R.
    McGinnis, Ralph
    McLaren, William
    Takeuchi, Fumihiko
    Grossman, Sharon R.
    [J]. NATURE, 2010, 467 (7311) : 52 - 58
  • [7] Punctuated Evolution of Prostate Cancer Genomes
    Baca, Sylvan C.
    Prandi, Davide
    Lawrence, Michael S.
    Mosquera, Juan Miguel
    Romanel, Alessandro
    Drier, Yotam
    Park, Kyung
    Kitabayashi, Naoki
    MacDonald, Theresa Y.
    Ghandi, Mahmoud
    Van Allen, Eliezer
    Kryukov, Gregory V.
    Sboner, Andrea
    Theurillat, Jean-Philippe
    Soong, T. David
    Nickerson, Elizabeth
    Auclair, Daniel
    Tewari, Ashutosh
    Beltran, Himisha
    Onofrio, Robert C.
    Boysen, Gunther
    Guiducci, Candace
    Barbieri, Christopher E.
    Cibulskis, Kristian
    Sivachenko, Andrey
    Carter, Scott L.
    Saksena, Gordon
    Voet, Douglas
    Ramos, Alex H.
    Winckler, Wendy
    Cipicchio, Michelle
    Ardlie, Kristin
    Kantoff, Philip W.
    Berger, Michael F.
    Gabriel, Stacey B.
    Golub, Todd R.
    Meyerson, Matthew
    Lander, Eric S.
    Elemento, Olivier
    Getz, Gad
    Demichelis, Francesca
    Rubin, Mark A.
    Garraway, Levi A.
    [J]. CELL, 2013, 153 (03) : 666 - 677
  • [8] Integrated genomic characterization of IDH1-mutant glioma malignant progression
    Bai, Hanwen
    Harmanci, Akdes Serin
    Erson-Omay, E. Zeynep
    Li, Jie
    Coskun, Sueleyman
    Simon, Matthias
    Krischek, Boris
    Ozduman, Koray
    Omay, S. Buelent
    Sorensen, Eric A.
    Turcan, Sevin
    Bakirciglu, Mehmet
    Carrion-Grant, Geneive
    Murray, Phillip B.
    Clark, Victoria E.
    Ercan-Sencicek, A. Gulhan
    Knight, James
    Sencar, Leman
    Altinok, Selin
    Kaulen, Leon D.
    Guelez, Burcu
    Timmer, Marco
    Schramm, Johannes
    Mishra-Gorur, Ketu
    Henegariu, Octavian
    Moliterno, Jennifer
    Louvi, Angeliki
    Chan, Timothy A.
    Tannheimer, Stacey L.
    Pamir, M. Necmettin
    Vortmeyer, Alexander O.
    Bilguvar, Kaya
    Yasuno, Katsuhito
    Guenel, Murat
    [J]. NATURE GENETICS, 2016, 48 (01) : 59 - +
  • [9] A comprehensive microRNA expression profile of the backfat tissue from castrated and intact full-sib pair male pigs
    Bai, Ying
    Huang, Jin-Ming
    Liu, Gang
    Zhang, Ji-Bin
    Wang, Jian-Ying
    Liu, Cheng-Kun
    Fang, Mei-Ying
    [J]. BMC GENOMICS, 2014, 15
  • [10] The landscape of somatic copy-number alteration across human cancers
    Beroukhim, Rameen
    Mermel, Craig H.
    Porter, Dale
    Wei, Guo
    Raychaudhuri, Soumya
    Donovan, Jerry
    Barretina, Jordi
    Boehm, Jesse S.
    Dobson, Jennifer
    Urashima, Mitsuyoshi
    Mc Henry, Kevin T.
    Pinchback, Reid M.
    Ligon, Azra H.
    Cho, Yoon-Jae
    Haery, Leila
    Greulich, Heidi
    Reich, Michael
    Winckler, Wendy
    Lawrence, Michael S.
    Weir, Barbara A.
    Tanaka, Kumiko E.
    Chiang, Derek Y.
    Bass, Adam J.
    Loo, Alice
    Hoffman, Carter
    Prensner, John
    Liefeld, Ted
    Gao, Qing
    Yecies, Derek
    Signoretti, Sabina
    Maher, Elizabeth
    Kaye, Frederic J.
    Sasaki, Hidefumi
    Tepper, Joel E.
    Fletcher, Jonathan A.
    Tabernero, Josep
    Baselga, Jose
    Tsao, Ming-Sound
    Demichelis, Francesca
    Rubin, Mark A.
    Janne, Pasi A.
    Daly, Mark J.
    Nucera, Carmelo
    Levine, Ross L.
    Ebert, Benjamin L.
    Gabriel, Stacey
    Rustgi, Anil K.
    Antonescu, Cristina R.
    Ladanyi, Marc
    Letai, Anthony
    [J]. NATURE, 2010, 463 (7283) : 899 - 905