Unsupervised Learning of Spatiotemporal Interictal Discharges in Focal Epilepsy

被引:24
作者
Baud, Maxime O. [1 ,2 ]
Kleen, Jonathan K. [2 ]
Anumanchipalli, Gopala K. [1 ]
Hamilton, Liberty S. [1 ]
Tan, Yee-Leng [2 ,3 ]
Knowlton, Robert [2 ]
Chang, Edward F. [1 ]
机构
[1] Univ Calif San Francisco, Dept Neurol Surg, 675 Nelson Rising Lane,Room 511, San Francisco, CA 94158 USA
[2] Univ Calif San Francisco, Dept Neurol, San Francisco, CA 94143 USA
[3] Natl Neurosci Inst, Singapore, Singapore
关键词
Epileptogenic tissue; Interictal epileptiform discharges; Automated detection; Non-negative matrix factorization; Intracranial monitoring; SPIKE DETECTION; EEG; STIMULATION; DATABASE; SYSTEM; ADULTS;
D O I
10.1093/neuros/nyx480
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
BACKGROUND: Interictal epileptiform discharges are an important biomarker for localization of focal epilepsy, especially in patients who undergo chronic intracranial monitoring. Manual detection of these pathophysiological events is cumbersome, but is still superior to current rule-based approaches in most automated algorithms. OBJECTIVE: To develop an unsupervised machine-learning algorithm for the improved, automated detection and localization of interictal epileptiform discharges based on spatiotemporal pattern recognition. METHODS: We decomposed 24 h of intracranial electroencephalography signals into basis functions and activation vectors using non-negative matrix factorization (NNMF). Thresholding the activation vector and the basis function of interest detected interictal epileptiform discharges in time and space (specific electrodes), respectively. We used convolutive NNMF, a refined algorithm, to add a temporal dimension to basis functions. RESULTS: The receiver operating characteristics for NNMF-based detection are close to the gold standard of human visual-based detection and superior to currently available alternative automated approaches (93% sensitivity and 97% specificity). The algorithm successfully identified thousands of interictal epileptiform discharges across a full day of neurophysiological recording and accurately summarized their localization into a single map. Adding a temporal window allowed for visualization of the archetypal propagation network of these epileptiform discharges. CONCLUSION: Unsupervised learning offers a powerful approach towards automated identification of recurrent pathological neurophysiological signals, which may have important implications for precise, quantitative, and individualized evaluation of focal epilepsy.
引用
收藏
页码:683 / 691
页数:9
相关论文
共 28 条
[1]   High inter-reviewer variability of spike detection on intracranial EEG addressed by an automated multi-channel algorithm [J].
Barkmeier, Daniel T. ;
Shah, Aashit K. ;
Flanagan, Danny ;
Atkinson, Marie D. ;
Agarwal, Rajeev ;
Fuerst, Darren R. ;
Jafari-Khouzani, Kourosh ;
Loeb, Jeffrey A. .
CLINICAL NEUROPHYSIOLOGY, 2012, 123 (06) :1088-1095
[2]   Long-term treatment with responsive brain stimulation in adults with refractory partial seizures [J].
Bergey, Gregory K. ;
Morrell, Martha J. ;
Mizrahi, Eli M. ;
Goldman, Alica ;
King-Stephens, David ;
Nair, Dileep ;
Srinivasan, Shraddha ;
Jobst, Barbara ;
Gross, Robert E. ;
Shields, Donald C. ;
Barkley, Gregory ;
Salanova, Vicenta ;
Olejniczak, Piotr ;
Cole, Andrew ;
Cash, Sydney S. ;
Noe, Katherine ;
Wharen, Robert ;
Worrell, Gregory ;
Murro, Anthony M. ;
Edwards, Jonathan ;
Duchowny, Michael ;
Spencer, David ;
Smith, Michael ;
Geller, Eric ;
Gwinn, Ryder ;
Skidmore, Christopher ;
Eisenschenk, Stephan ;
Berg, Michel ;
Heck, Christianne ;
Van Ness, Paul ;
Fountain, Nathan ;
Rutecki, Paul ;
Massey, Andrew ;
O'Donovan, Cormac ;
Labar, Douglas ;
Duckrow, Robert B. ;
Hirsch, Lawrence J. ;
Courtney, Tracy ;
Sun, Felice T. ;
Seale, Cairn G. .
NEUROLOGY, 2015, 84 (08) :810-817
[3]   Automated identification of multiple seizure-related and interictal epileptiform event types in the EEG of mice [J].
Bergstrom, Rachel A. ;
Choi, Jee Hyun ;
Manduca, Armando ;
Shin, Hee-Sup ;
Worrell, Greg A. ;
Howe, Charles L. .
SCIENTIFIC REPORTS, 2013, 3
[4]   A method to identify reproducible subsets of co-activated structures during interictal spikes. Application to intracerebral EEG in temporal lobe epilepsy [J].
Bourien, J ;
Bartolomei, F ;
Bellanger, JJ ;
Gavaret, M ;
Chauvel, P ;
Wendling, F .
CLINICAL NEUROPHYSIOLOGY, 2005, 116 (02) :443-455
[5]   Electroencephalographic source imaging: a prospective study of 152 operated epileptic patients [J].
Brodbeck, Verena ;
Spinelli, Laurent ;
Lascano, Agustina M. ;
Wissmeier, Michael ;
Vargas, Maria-Isabel ;
Vulliemoz, Serge ;
Pollo, Claudio ;
Schaller, Karl ;
Michel, Christoph M. ;
Seeck, Margitta .
BRAIN, 2011, 134 :2887-2897
[6]   Automated quantification of spikes [J].
Chavakula, Vamsidhar ;
Sanchez Fernandez, Ivan ;
Peters, Jurriaan M. ;
Popli, Gautam ;
Bosl, William ;
Rakhade, Sanjay ;
Rotenberg, Alexander ;
Loddenkemper, Tobias .
EPILEPSY & BEHAVIOR, 2013, 26 (02) :143-152
[7]   Dynamic directed interictal connectivity in left and right temporal lobe epilepsy [J].
Coito, Ana ;
Plomp, Gijs ;
Genetti, Melanie ;
Abela, Eugenio ;
Wiest, Roland ;
Seeck, Margitta ;
Michel, Christoph M. ;
Vulliemoz, Serge .
EPILEPSIA, 2015, 56 (02) :207-217
[8]  
Esteller R, 2004, P ANN INT IEEE EMBS, V26, P4710
[9]   Standardized database development for EEG epileptiform transient detection: EEGnet scoring system and machine learning analysis [J].
Halford, Jonathan J. ;
Schalkoff, Robert J. ;
Zhou, Jing ;
Benbadis, Selim R. ;
Tatum, William O. ;
Turner, Robert P. ;
Sinha, Saurabh R. ;
Fountain, Nathan B. ;
Arain, Amir ;
Pritchard, Paul B. ;
Kutluay, Ekrem ;
Martz, Gabriel ;
Edwards, Jonathan C. ;
Waters, Chad ;
Dean, Brian C. .
JOURNAL OF NEUROSCIENCE METHODS, 2013, 212 (02) :308-316
[10]   Two-year seizure reduction in adults with medically intractable partial onset epilepsy treated with responsive neurostimulation: Final results of the RNS System Pivotal trial [J].
Heck, Christianne N. ;
King-Stephens, David ;
Massey, Andrew D. ;
Nair, Dileep R. ;
Jobst, Barbara C. ;
Barkley, Gregory L. ;
Salanova, Vicenta ;
Cole, Andrew J. ;
Smith, Michael C. ;
Gwinn, Ryder P. ;
Skidmore, Christopher ;
Van Ness, Paul C. ;
Bergey, Gregory K. ;
Park, Yong D. ;
Miller, Ian ;
Geller, Eric ;
Rutecki, Paul A. ;
Zimmerman, Richard ;
Spencer, David C. ;
Goldman, Alica ;
Edwards, Jonathan C. ;
Leiphart, James W. ;
Wharen, Robert E. ;
Fessler, James ;
Fountain, Nathan B. ;
Worrell, Gregory A. ;
Gross, Robert E. ;
Eisenschenk, Stephan ;
Duckrow, Robert B. ;
Hirsch, Lawrence J. ;
Bazil, Carl ;
O'Donovan, Cormac A. ;
Sun, Felice T. ;
Courtney, Tracy A. ;
Seale, Cairn G. ;
Morrell, Martha J. .
EPILEPSIA, 2014, 55 (03) :432-441