The Expanding Constellation of Histone Post-Translational Modifications in the Epigenetic Landscape

被引:61
作者
Cavalieri, Vincenzo [1 ]
机构
[1] Univ Palermo, Dept Biol Chem & Pharmaceut Sci & Technol, I-90128 Palermo, Italy
关键词
histone post-translational modifications; chromatin; nucleosome; epigenetics; C-TERMINAL TAIL; ACETYLGLUCOSAMINE TRANSFERASE OGT; GENE-EXPRESSION; IN-VIVO; CHROMOSOME CONDENSATION; METABOLIC-REGULATION; H3K4; METHYLATION; LYSINE; 2-HYDROXYISOBUTYRYLATION; CHROMATIN MODIFICATION; ARGININE METHYLATION;
D O I
10.3390/genes12101596
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The emergence of a nucleosome-based chromatin structure accompanied the evolutionary transition from prokaryotes to eukaryotes. In this scenario, histones became the heart of the complex and precisely timed coordination between chromatin architecture and functions during adaptive responses to environmental influence by means of epigenetic mechanisms. Notably, such an epigenetic machinery involves an overwhelming number of post-translational modifications at multiple residues of core and linker histones. This review aims to comprehensively describe old and recent evidence in this exciting field of research. In particular, histone post-translational modification establishing/removal mechanisms, their genomic locations and implication in nucleosome dynamics and chromatin-based processes, as well as their harmonious combination and interdependence will be discussed.
引用
收藏
页数:22
相关论文
共 240 条
[61]   Histone H3.3 and its proteolytically processed form drive a cellular senescence programme [J].
Duarte, Luis F. ;
Young, Andrew R. J. ;
Wang, Zichen ;
Wu, Hsan-Au ;
Panda, Taniya ;
Kou, Yan ;
Kapoor, Avnish ;
Hasson, Dan ;
Mills, Nicholas R. ;
Ma'ayan, Avi ;
Narita, Masashi ;
Bernstein, Emily .
NATURE COMMUNICATIONS, 2014, 5
[62]   Cathepsin L Proteolytically Processes Histone H3 During Mouse Embryonic Stem Cell Differentiation [J].
Duncan, Elizabeth M. ;
Muratore-Schroeder, Tara L. ;
Cook, Richard G. ;
Garcia, Benjamin A. ;
Shabanowitz, Jeffrey ;
Hunt, Donald F. ;
Allis, C. David .
CELL, 2008, 135 (02) :284-294
[63]   Quantitative Analysis of Histone Modifications: Formaldehyde Is a Source of Pathological N6-Formyllysine That Is Refractory to Histone Deacetylases [J].
Edrissi, Bahar ;
Taghizadeh, Koli ;
Dedon, Peter C. .
PLOS GENETICS, 2013, 9 (02)
[64]   CHROMATIN-BOUND PROTEOLYTIC ACTIVITY WITH UNIQUE SPECIFICITY FOR HISTONE H2A [J].
EICKBUSH, TH ;
WATSON, DK ;
MOUDRIANAKIS, EN .
CELL, 1976, 9 (04) :785-792
[65]   Discovery and characterization of chromatin states for systematic annotation of the human genome [J].
Ernst, Jason ;
Kellis, Manolis .
NATURE BIOTECHNOLOGY, 2010, 28 (08) :817-U94
[66]   Histone serotonylation is a permissive modification that enhances TFIID binding to H3K4me3 [J].
Farrelly, Lorna A. ;
Thompson, Robert E. ;
Zhao, Shuai ;
Lepack, Ashley E. ;
Lyu, Yang ;
Bhanu, Natarajan V. ;
Zhang, Baichao ;
Loh, Yong-Hwee E. ;
Ramakrishnan, Aarthi ;
Vadodaria, Krishna C. ;
Heard, Kelly J. ;
Erikson, Galina ;
Nakadai, Tomoyoshi ;
Bastle, Ryan M. ;
Lukasak, Bradley J. ;
Zebroski, Henry, III ;
Alenina, Natalia ;
Bader, Michael ;
Berton, Olivier ;
Roeder, Robert G. ;
Molina, Henrik ;
Gage, Fred H. ;
Shen, Li ;
Garcia, Benjamin A. ;
Li, Haitao ;
Muir, Tom W. ;
Maze, Ian .
NATURE, 2019, 567 (7749) :535-+
[67]   Site-selective chemoenzymatic construction of synthetic glycoproteins using endoglycosidases [J].
Fernandez-Gonzalez, Marta ;
Boutureira, Omar ;
Bernardes, Goncalo J. L. ;
Chalker, Justin M. ;
Young, Matthew A. ;
Errey, James C. ;
Davis, Benjamin G. .
CHEMICAL SCIENCE, 2010, 1 (06) :709-715
[68]   Histone H2B ubiquitylation disrupts local and higher-order chromatin compaction [J].
Fierz, Beat ;
Chatterjee, Champak ;
McGinty, Robert K. ;
Bar-Dagan, Maya ;
Raleigh, Daniel P. ;
Muir, Tom W. .
NATURE CHEMICAL BIOLOGY, 2011, 7 (02) :113-119
[69]   The Role of Histone H4 Biotinylation in the Structure of Nucleosomes [J].
Filenko, Nina A. ;
Kolar, Carol ;
West, John T. ;
Smith, S. Abbie ;
Hassan, Yousef I. ;
Borgstahl, Gloria E. O. ;
Zempleni, Janos ;
Lyubchenko, Yuri L. .
PLOS ONE, 2011, 6 (01)
[70]   Binary switches and modification cassettes in histone biology and beyond [J].
Fischle, W ;
Wang, YM ;
Allis, CD .
NATURE, 2003, 425 (6957) :475-479