Elongation/compaction of giant DNA caused by depletion interaction with a flexible polymer

被引:36
作者
Kojima, M [1 ]
Kubo, K [1 ]
Yoshikawa, K [1 ]
机构
[1] Kyoto Univ, Grad Sch Sci, Dept Phys, Kyoto 6068502, Japan
关键词
D O I
10.1063/1.2145752
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Structural changes in giant DNA induced by the addition of the flexible polymer Polyethylene Glycol (PEG) were examined by the method of single-DNA observation. In dilute DNA conditions, individual DNA assumes a compact state via a discrete coil-globule transition, whereas in concentrated solution, DNA molecules exhibit an extended conformation via macroscopic phase segregation. The long-axis length of the stretched state in DNA is about 10(3) times larger than that of the compact state. Phase segregation at high DNA concentrations occurs at lower PEG concentrations than the compaction at low DNA concentrations. These opposite changes in the conformation of DNA molecule are interpreted in terms of the free energy, including depletion interaction. (c) 2006 American Institute of Physics.
引用
收藏
页数:4
相关论文
共 22 条
[11]   Soft condensed matter physics [J].
Lubensky, TC .
SOLID STATE COMMUNICATIONS, 1997, 102 (2-3) :187-197
[12]   Scaling and mean-field theories applied to polymer brushes [J].
Marsh, D .
BIOPHYSICAL JOURNAL, 2004, 86 (04) :2630-2633
[13]   DIRECT OBSERVATION OF THE COIL-GLOBULE TRANSITION IN DNA-MOLECULES [J].
MINAGAWA, K ;
MATSUZAWA, Y ;
YOSHIKAWA, K ;
KHOKHLOV, AR ;
DOI, M .
BIOPOLYMERS, 1994, 34 (04) :555-558
[14]   Neutral and charged polymers at interfaces [J].
Netz, RR ;
Andelman, D .
PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS, 2003, 380 (1-2) :1-95
[15]   Self-organized nanostructures constructed with a single polymer chain [J].
Noguchi, H ;
Saito, S ;
Kidoaki, S ;
Yoshikawa, K .
CHEMICAL PHYSICS LETTERS, 1996, 261 (4-5) :527-533
[16]   Why is the compact state of DNA preferred at higher temperature? Folding transition of a single DNA chain in the presence of a multivalent cation [J].
Saito, T ;
Iwaki, T ;
Yoshikawa, K .
EUROPHYSICS LETTERS, 2005, 71 (02) :304-310
[17]   Equation of state for DNA liquid crystals: Fluctuation enhanced electrostatic double layer repulsion [J].
Strey, HH ;
Parsegian, VA ;
Podgornik, R .
PHYSICAL REVIEW LETTERS, 1997, 78 (05) :895-898
[18]   Depletion-induced phase separation in colloid-polymer mixtures [J].
Tuinier, R ;
Rieger, J ;
de Kruif, CG .
ADVANCES IN COLLOID AND INTERFACE SCIENCE, 2003, 103 (01) :1-31
[19]   Deformation of toroidal DNA condensates under surface stress [J].
Ubbink, J ;
Odijk, T .
EUROPHYSICS LETTERS, 1996, 33 (05) :353-358
[20]   COLLAPSE OF SINGLE DNA MOLECULE IN POLY(ETHYLENE GLYCOL) SOLUTIONS [J].
VASILEVSKAYA, VV ;
KHOKHLOV, AR ;
MATSUZAWA, Y ;
YOSHIKAWA, K .
JOURNAL OF CHEMICAL PHYSICS, 1995, 102 (16) :6595-6602