16S metagenomic analysis reveals adaptability of a mixed-PAH-degrading consortium isolated from crude oil-contaminated seawater to changing environmental conditions

被引:104
作者
Muangchinda, Chanokporn [1 ]
Rungsihiranrut, Adisan [1 ]
Prombutara, Pinidphon [2 ]
Soonglerdsongpha, Suwat [3 ]
Pinyakong, Onruthai [1 ,2 ,4 ]
机构
[1] Chulalongkorn Univ, Fac Sci, Dept Microbiol, Microbial Technol Marine Pollut Treatment Res Uni, Bangkok 10330, Thailand
[2] Chulalongkorn Univ, Fac Sci, Omics Sci & Bioinformat Ctr, Bangkok, Thailand
[3] PTT Publ Co Ltd, PTT Res & Technol Inst, Environm Technol Res Dept, Ayutthaya, Thailand
[4] Chulalongkorn Univ, Ctr Excellence Hazardous Subst Management HSM, Res Program Remediat Technol Petr Contaminat, Bangkok, Thailand
关键词
Oil spill; Polycyclic aromatic hydrocarbons; Biodegradation; Bacterial consortium; Next generation sequencing (NGS); POLYCYCLIC AROMATIC-HYDROCARBONS; SHIP BREAKING YARD; MICROBIAL-POPULATION; MANGROVE SEDIMENT; SPHINGOMONAS SP; RIVER SEDIMENT; WASTE-WATER; BIODEGRADATION; BACTERIA; DEGRADATION;
D O I
10.1016/j.jhazmat.2018.05.062
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
A bacterial consortium, named SWO, was enriched from crude oil-contaminated seawater from Phrao Bay in Rayong Province, Thailand, after a large oil spill in 2013. The bacterial consortium degraded a polycyclic aromatic hydrocarbon (PAH) mixture consisting of phenanthrene, anthracene, fluoranthene, and pyrene (50 mg L-1 each) by approximately 73%, 69%, 52%, and 48%, respectively, within 21 days. This consortium exhibited excellent adaptation to a wide range of environmental conditions. It could degrade a mixture of four PAHs under a range of pH values (4.0-9.0), temperatures (25 degrees C-37 degrees C), and salinities (0-10 g L-1 with NaCl). In addition, this consortium degraded 20-30% of benzo[a]pyrene and perylene (10 mg L-1 each), high molecular weight PAHs, in the presence of other PAHs within 35 days, and degraded 40% of 2% (v/v) crude oil within 20 days. The 16S rRNA gene amplicon sequencing analysis demonstrated that Pseudomonas and Methylophaga were the dominant genera of consortium SWO in almost all treatments, while Pseudidiomarina, Thalassospira and Alcanivorax were predominant under higher salt concentrations. Moreover, Pseudomonas and Alcanivorax were dominant in the crude oil-degradation treatment. Our results suggest that the consortium SWO maintained its biodegradation ability by altering the bacterial community profile upon encountering changes in the environmental conditions.
引用
收藏
页码:119 / 127
页数:9
相关论文
共 65 条
[1]   Polycyclic aromatic hydrocarbons (PAHs) biodegradation potential and diversity of microbial consortia enriched from tsunami sediments in Miyagi, Japan [J].
Bacosa, Hernando Pactao ;
Inoue, Chihiro .
JOURNAL OF HAZARDOUS MATERIALS, 2015, 283 :689-697
[2]   Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample [J].
Caporaso, J. Gregory ;
Lauber, Christian L. ;
Walters, William A. ;
Berg-Lyons, Donna ;
Lozupone, Catherine A. ;
Turnbaugh, Peter J. ;
Fierer, Noah ;
Knight, Rob .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 :4516-4522
[3]   Multi-factors on biodegradation kinetics of polycyclic aromatic hydrocarbons (PAHs) by Sphingomonas sp a bacterial strain isolated from mangrove sediment [J].
Chen, Jianfin ;
Wong, M. H. ;
Wong, Y. S. ;
Tam, Nora F. Y. .
MARINE POLLUTION BULLETIN, 2008, 57 (6-12) :695-702
[4]   Profiling of microbial community during in situ remediation of volatile sulfide compounds in river sediment with nitrate by high throughput sequencing [J].
Chen, Lei ;
Wang, Ling-yun ;
Liu, Shu-juan ;
Hu, Jiang-yong ;
He, Yan ;
Zhou, Hong-wei ;
Zhang, Xi-hui .
INTERNATIONAL BIODETERIORATION & BIODEGRADATION, 2013, 85 :429-437
[5]   UCHIME improves sensitivity and speed of chimera detection [J].
Edgar, Robert C. ;
Haas, Brian J. ;
Clemente, Jose C. ;
Quince, Christopher ;
Knight, Rob .
BIOINFORMATICS, 2011, 27 (16) :2194-2200
[6]   Recent studies in microbial degradation of petroleum hydrocarbons in hypersaline environments [J].
Fathepure, Babu Z. .
FRONTIERS IN MICROBIOLOGY, 2014, 5
[7]   Bacterial diversity of water and sediment in the Changjiang estuary and coastal area of the East China Sea [J].
Feng, Bi-Wei ;
Li, Xiao-Ran ;
Wang, Jin-Hui ;
Hu, Zi-Ye ;
Meng, Han ;
Xiang, Ling-Yun ;
Quan, Zhe-Xue .
FEMS MICROBIOLOGY ECOLOGY, 2009, 70 (02) :236-248
[8]   Sphingobium sp FB3 degrades a mixture of polycyclic aromatic hydrocarbons [J].
Fu, Bo ;
Li, Qing X. ;
Xu, Ting ;
Cui, Zhong L. ;
Sun, Ying ;
Li, Ji .
INTERNATIONAL BIODETERIORATION & BIODEGRADATION, 2014, 87 :44-51
[9]   Multiple degradation pathways of phenanthrene by Stenotrophomonas maltophilia C6 [J].
Gao, Shumei ;
Seo, Jong-Su ;
Wang, Jun ;
Keum, Young-Soo ;
Li, Jianqiang ;
Li, Qing X. .
INTERNATIONAL BIODETERIORATION & BIODEGRADATION, 2013, 79 :98-104
[10]   Microbial population dynamics associated with crude-oil biodegradation in diverse soils [J].
Hamamura, Natsuko ;
Olson, Sarah H. ;
Ward, David M. ;
Inskeep, William P. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (09) :6316-6324