Proteomic analysis of FFPE tissue: barriers to clinical impact

被引:17
作者
Mason, Jeffrey T. [1 ,2 ]
机构
[1] Baltimore VA Med Ctr, Dept Res, Baltimore, MD 21201 USA
[2] Baltimore VA Med Ctr, Dept Pathol, Baltimore, MD 21201 USA
关键词
Proteomics; formalin-fixed; paraffin-embedded (FFPE) tissue; preanalytical factors; protein extraction; bioinformatics; PARAFFIN-EMBEDDED TISSUES; PREANALYTICAL FACTORS; PROTEIN; EXTRACTION; EXPRESSION; SAMPLES; CANCER;
D O I
10.1080/14789450.2016.1221346
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
引用
收藏
页码:801 / 803
页数:3
相关论文
共 19 条
[1]   Evaluation of Archival Time on Shotgun Proteomics of Formalin-Fixed and Paraffin-Embedded Tissues [J].
Balgley, Brian M. ;
Guo, Tong ;
Zhao, Kejia ;
Fang, Xueping ;
Tavassoli, Fattaneh A. ;
Lee, Cheng S. .
JOURNAL OF PROTEOME RESEARCH, 2009, 8 (02) :917-925
[2]   A Review of Preanalytical Factors Affecting Molecular, Protein, and Morphological Analysis of Formalin-Fixed, Paraffin-Embedded (FFPE) Tissue How Well Do You Know Your FFPE Specimen? [J].
Bass, B. Paige ;
Engel, Kelly B. ;
Greytak, Sarah R. ;
Moore, Helen M. .
ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE, 2014, 138 (11) :1520-1530
[3]   Using tissue samples for proteomic studies-Critical considerations [J].
Becker, Karl-Friedrich .
PROTEOMICS CLINICAL APPLICATIONS, 2015, 9 (3-4) :257-267
[4]   Comparison of multiple protein extraction buffers for GeLC-MS/MS proteomic analysis of liver and colon formalin-fixed, paraffin-embedded tissues [J].
Broeckx, Valerie ;
Boonen, Kurt ;
Pringels, Lentel ;
Sagaert, Xavier ;
Prenen, Hans ;
Landuyt, Bart ;
Schoofs, Liliane ;
Maes, Evelyne .
MOLECULAR BIOSYSTEMS, 2016, 12 (02) :553-565
[5]   Formalin-fixed paraffin-embedded tissue: The holy grail of clinical proteomics [J].
Broeckx, Valerie ;
Peeters, Lise ;
Maes, Evelyne ;
Pringels, Lentel ;
Verjans, Eddy-Tim ;
Landuyt, Bart .
PROTEOMICS CLINICAL APPLICATIONS, 2014, 8 (9-10) :735-736
[6]   A Portrait of Tissue Phosphoprotein Stability in the Clinical Tissue Procurement Process [J].
Espina, Virginia ;
Edmiston, Kirsten H. ;
Heiby, Michael ;
Pierobon, Mariaelena ;
Sciro, Manuela ;
Merritt, Barbara ;
Banks, Stacey ;
Deng, Jianghong ;
VanMeter, Amy J. ;
Geho, David H. ;
Pastore, Lucia ;
Sennesh, Joel ;
Petricoin, Emanuel F., III ;
Liotta, Lance A. .
MOLECULAR & CELLULAR PROTEOMICS, 2008, 7 (10) :1998-2018
[7]   BRCA1 deficiency in ovarian cancer is associated with alteration in expression of several key regulators of cell motility - A proteomics study [J].
Gau, David M. ;
Lesnock, Jamie L. ;
Hood, Brian L. ;
Bhargava, Rohit ;
Sun, Mai ;
Darcy, Kathleen ;
Luthra, Soumya ;
Chandran, Uma ;
Conrads, Thomas P. ;
Edwards, Robert P. ;
Kelley, Joseph L. ;
Krivak, Thomas C. ;
Roy, Partha .
CELL CYCLE, 2015, 14 (12) :1884-1892
[8]   Proteomic developments in the analysis of formalin-fixed tissue [J].
Gustafsson, Ove J. R. ;
Arentz, Georgia ;
Hoffmann, Peter .
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 2015, 1854 (06) :559-580
[9]   Advancing formaldehyde cross-linking towards quantitative proteomic applications [J].
Klockenbusch, Cordula ;
O'Hara, Jane E. ;
Kast, Juergen .
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2012, 404 (04) :1057-1067
[10]   Archived Formalin-Fixed Paraffin-Embedded (FFPE) Blocks: A Valuable Underexploited Resource for Extraction of DNA, RNA, and Protein [J].
Kokkat, Theresa J. ;
Patel, Miral S. ;
McGarvey, Diane ;
LiVolsi, Virginia A. ;
Baloch, Zubair W. .
BIOPRESERVATION AND BIOBANKING, 2013, 11 (02) :101-106