A NOVEL COMPARATIVE METHOD FOR IDENTIFYING SHIFTS IN THE RATE OF CHARACTER EVOLUTION ON TREES

被引:190
作者
Eastman, Jonathan M. [1 ]
Alfaro, Michael E. [2 ]
Joyce, Paul [3 ,6 ]
Hipp, Andrew L. [4 ,5 ]
Harmon, Luke J.
机构
[1] Univ Idaho, Dept Biol Sci, Inst Bioinformat & Evolutionary Studies IBEST, Moscow, ID 83843 USA
[2] Univ Calif Los Angeles, Dept Ecol & Evolutionary Biol, Los Angeles, CA 90095 USA
[3] Univ Idaho, Dept Stat, Moscow, ID 83843 USA
[4] Morton Arboretum, Lisle, IL 60532 USA
[5] Field Museum Nat Hist, Chicago, IL 60605 USA
[6] Univ Idaho, Dept Math, Moscow, ID 83843 USA
基金
美国国家科学基金会;
关键词
Bayesian inference; Chelonia; comparative methods; primates; rate heterogeneity; reversible-jump MCMC; trait evolution; CHAIN MONTE-CARLO; STABILIZING SELECTION; PHYLOGENETIC SIGNAL; TRAIT EVOLUTION; BODY-SIZE; LIKELIHOOD; MODEL; DIVERSIFICATION; RECONSTRUCTION; HYPOTHESES;
D O I
10.1111/j.1558-5646.2011.01401.x
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Evolutionary biologists since Darwin have been fascinated by differences in the rate of trait-evolutionary change across lineages. Despite this continued interest, we still lack methods for identifying shifts in evolutionary rates on the growing tree of life while accommodating uncertainty in the evolutionary process. Here we introduce a Bayesian approach for identifying complex patterns in the evolution of continuous traits. The method (auteur) uses reversible-jump Markov chain Monte Carlo sampling to more fully characterize the complexity of trait evolution, considering models that range in complexity from those with a single global rate to potentially ones in which each branch in the tree has its own independent rate. This newly introduced approach performs well in recovering simulated rate shifts and simulated rates for datasets nearing the size typical for comparative phylogenetic study (i.e., =64 tips). Analysis of two large empirical datasets of vertebrate body size reveal overwhelming support for multiple-rate models of evolution, and we observe exceptionally high rates of body-size evolution in a group of emydid turtles relative to their evolutionary background. auteur will facilitate identification of exceptional evolutionary dynamics, essential to the study of both adaptive radiation and stasis.
引用
收藏
页码:3578 / 3589
页数:12
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