ngn-1/neurogenin Activates Transcription of Multiple Terminal Selector Transcription Factors in the Caenorhabditis elegans Nervous System

被引:9
作者
Christensen, Elyse L. [1 ,3 ]
Beasley, Alexandra [1 ]
Radchuk, Jessica [1 ]
Mielko, Zachery E. [1 ,4 ]
Preston, Elicia [2 ]
Stuckett, Sidney [1 ]
Murray, John I. [2 ]
Hudson, Martin L. [1 ]
机构
[1] Kennesaw State Univ, Dept Mol & Cellular Biol, Bldg 12,Room SC507,370 Paulding Ave, Kennesaw, GA 30144 USA
[2] Univ Penn, Perelman Sch Med, Philadelphia, PA 19104 USA
[3] Emory Univ, Winship Canc Inst, Atlanta, GA 30322 USA
[4] Duke Univ, Ctr Genom & Computat Biol, Durham, NC 27708 USA
关键词
cell fate specification; basic-helix-loop-helix; RNAseq; comparative transcriptome; proneural; GLUTAMATE-RECEPTOR SUBUNITS; EPHRIN EFN-4 FUNCTIONS; C; ELEGANS; GENE-EXPRESSION; AXON GUIDANCE; NEURODEVELOPMENTAL DISORDER; CELL LINEAGE; NEUROGENIN; DISTINCT; SCHIZOPHRENIA;
D O I
10.1534/g3.120.401126
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Proper nervous system development is required for an organism's survival and function. Defects in neurogenesis have been linked to neurodevelopmental disorders such as schizophrenia and autism. Understanding the gene regulatory networks that orchestrate neural development, specifically cascades of proneural transcription factors, can better elucidate which genes are most important during early neurogenesis. Neurogenins are a family of deeply conserved factors shown to be both necessary and sufficient for the development of neural subtypes. However, the immediate downstream targets of neurogenin are not well characterized. The objective of this study was to further elucidate the role of /neurogenin in nervous system development and to identify its downstream transcriptional targets, using the nematode Caenorhabditis elegans as a model for this work. We found that is required for axon outgrowth, nerve ring architecture, and neuronal cell fate specification. We also showed that may have roles in neuroblast migration and epithelial integrity during embryonic development. Using RNA sequencing and comparative transcriptome analysis, we identified eight transcription factors (/NPAS1, /PROP1, /PHOX2A, /LHX6, /NR2E3, /LHX1, /ZNF503, and /RORB) whose transcription is activated, either directly or indirectly, by . Our results show that has a role in transcribing known terminal regulators that establish and maintain cell fate of differentiated neural subtypes and confirms that functions as a proneural transcription factor in C. elegans neurogenesis.
引用
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页码:1949 / 1962
页数:14
相关论文
共 74 条
[1]   The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update [J].
Afgan, Enis ;
Baker, Dannon ;
Batut, Berenice ;
van den Beek, Marius ;
Bouvier, Dave ;
Cech, Martin ;
Chilton, John ;
Clements, Dave ;
Coraor, Nate ;
Gruening, Bjoern A. ;
Guerler, Aysam ;
Hillman-Jackson, Jennifer ;
Hiltemann, Saskia ;
Jalili, Vahid ;
Rasche, Helena ;
Soranzo, Nicola ;
Goecks, Jeremy ;
Taylor, James ;
Nekrutenko, Anton ;
Blankenberg, Daniel .
NUCLEIC ACIDS RESEARCH, 2018, 46 (W1) :W537-W544
[2]  
Angeles-Albores David, 2018, MicroPubl Biol, V2018, DOI 10.17912/W25Q2N
[3]   Tissue enrichment analysis for C. elegans genomics [J].
Angeles-Albores, David ;
Lee, Raymond Y. N. ;
Chan, Juancarlos ;
Sternberg, Paul W. .
BMC BIOINFORMATICS, 2016, 17
[4]  
Bao Z, 2011, COLD SPRING HARBOR P, P9
[5]   Automated cell lineage tracing in Caenorhabditis elegans [J].
Bao, ZR ;
Murray, JI ;
Boyle, T ;
Ooi, SL ;
Sandel, MJ ;
Waterston, RH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (08) :2707-2712
[6]   A gene-centered C.elegans protein-DNA interaction network provides a framework for functional predictions [J].
Bass, Juan I. Fuxman ;
Pons, Carles ;
Kozlowski, Lucie ;
Reece-Hoyes, John S. ;
Shrestha, Shaleen ;
Holdorf, Amy D. ;
Mori, Akihiro ;
Myers, Chad L. ;
Walhout, Albertha J. M. .
MOLECULAR SYSTEMS BIOLOGY, 2016, 12 (10)
[7]   AceTree:: a tool for visual analysis of Caenorhabditis elegans embryogenesis [J].
Boyle, Thomas J. ;
Bao, Zhirong ;
Murray, John I. ;
Araya, Carlos L. ;
Waterston, Robert H. .
BMC BIOINFORMATICS, 2006, 7 (1)
[8]  
BRENNER S, 1974, GENETICS, V77, P71
[9]   Differential expression of glutamate receptor subunits in the nervous system of Caenorhabditis elegans and their regulation by the homeodomain protein UNC-42 [J].
Brockie, PJ ;
Madsen, DM ;
Zheng, Y ;
Mellem, J ;
Maricq, AV .
JOURNAL OF NEUROSCIENCE, 2001, 21 (05) :1510-1522
[10]   Heparan sulfate proteoglycan-dependent induction of axon branching and axon misrouting by the Kallmann syndrome gene kal-1 [J].
Bülow, HE ;
Berry, KL ;
Topper, LH ;
Peles, E ;
Hobert, O .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (09) :6346-6351