Phylogeny, divergence time estimation, and biogeography of the genus Heterobasidion (Basidiomycota, Russulales)

被引:103
作者
Chen, Jia-Jia [1 ,2 ]
Cui, Bao-Kai [1 ,2 ]
Zhou, Li-Wei [3 ]
Korhonen, Kari [4 ]
Dai, Yu-Cheng [1 ,2 ]
机构
[1] Beijing Forestry Univ, Inst Microbiol, Beijing 100083, Peoples R China
[2] Beijing Forestry Univ, Beijing Key Lab Forest Pest Control, Beijing 100083, Peoples R China
[3] Chinese Acad Sci, State Key Lab Forest & Soil Ecol, Inst Appl Ecol, Shenyang 110164, Peoples R China
[4] Finnish Forest Res Inst, Vantaa Unit, FIN-01301 Vantaa, Finland
关键词
Biogeography; Divergence time; Heterobasidion; Phylogeny; Refugia; F-INTERSTERILITY GROUPS; HISTORICAL BIOGEOGRAPHY; MOLECULAR PHYLOGENETICS; EVOLUTIONARY HISTORY; SP-NOV; ANNOSUM; MUSHROOMS; PHYLOGEOGRAPHY; INFERENCE; SEQUENCE;
D O I
10.1007/s13225-014-0317-2
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
There have been several investigations into the genus Heterobasidion, however, differentiation of species in these studies have depended on the gene regions analyzed. Reliable defining of species, establishing species divergence times and establishing species biogeographical distributions have been challenging. Here, we used a multilocus phylogenetic approach and maximum parsimony, maximum likehood, and Bayesian analyses to infer the phylogenetic relationships of Heterobasidion species. In addition, we focused on a fungus fossil-based approach and used the largest subunit of RNA polymerase II-the second subunit of RNA polymerase II (RPB1-RPB2) dataset to perform maximum likelihood-based estimation and Bayesian binary analyses, to assess the divergence and biogeographical distributions of Heterobasidion species. The Heterobasidion annousum/ H. insulare species complex clusters in three groups in the phylogenetic analyses. Molecular dating suggests that ancestral Heterobasidion species originated in Eurasia during the Early Miocene, followed by dispersal and speciation to other continents during the Middle Miocene and Early Pliocene. Our data are compatible with the previous viewpoint that H. irregulare and H. occidentale colonized North America via different routes, which has been interpreted as Beringian and Thulean North Atlantic vicariance. In addition, we propose that the occurrence of H. araucariae in the southern Hemisphere was probably due to recent human-mediated introductions. Plate tectonics and long-distance dispersal are the most likely factors that influenced Heterobasidion speciation and biogeography.
引用
收藏
页码:185 / 200
页数:16
相关论文
共 77 条
[1]   Multiple gene genealogies reveal asymmetrical hybridization and introgression among strongylocentrotid sea urchins [J].
Addison, Jason A. ;
Pogson, Grant H. .
MOLECULAR ECOLOGY, 2009, 18 (06) :1239-1251
[2]  
[Anonymous], 2002, PAUP* phylogenetic analysis using parsimony (*and other methods) version 4
[3]   Sequence polymorphism and molecular characterization of laccase genes of the conifer pathogen Heterobasidion annosum [J].
Asiegbu, FO ;
Abu, S ;
Stenlid, J ;
Johansson, M .
MYCOLOGICAL RESEARCH, 2004, 108 :136-148
[4]  
Berbee Mary L., 2010, Fungal Biology Reviews, V24, P1, DOI 10.1016/j.fbr.2010.03.001
[5]  
BUCHANAN PK, 1988, MYCOTAXON, V32, P325
[6]   Species clarification of the prize medicinal Ganoderma mushroom "Lingzhi" [J].
Cao, Yun ;
Wu, Sheng-Hua ;
Dai, Yu-Cheng .
FUNGAL DIVERSITY, 2012, 56 (01) :49-62
[7]  
CAPRETTI P, 1989, EUR J FOREST PATHOL, V19, P257
[8]   Global vegetation change through the Miocene/Pliocene boundary [J].
Cerling, TE ;
Harris, JM ;
MacFadden, BJ ;
Leakey, MG ;
Quade, J ;
Eisenmann, V ;
Ehleringer, JR .
NATURE, 1997, 389 (6647) :153-158
[9]   Two new species of the Heterobasidion insulare complex based on morphology and molecular data [J].
Chen, Jia-Jia ;
Korhonen, Kari ;
Li, Wei ;
Dai, Yu-Cheng .
MYCOSCIENCE, 2014, 55 (04) :289-298
[10]   Multiple sequence alignment with the Clustal series of programs [J].
Chenna, R ;
Sugawara, H ;
Koike, T ;
Lopez, R ;
Gibson, TJ ;
Higgins, DG ;
Thompson, JD .
NUCLEIC ACIDS RESEARCH, 2003, 31 (13) :3497-3500