Co-occurence of Crenarchaeota, Thermoplasmata and methanogens in anaerobic sludge digesters

被引:21
作者
Chouari, Rakia [1 ]
Guermazi, Sonda [2 ]
Sghir, Abdelghani [3 ,4 ]
机构
[1] Univ Carthage, Fac Sci Bizerte, Zarzouna 7021, Bizerte, Tunisia
[2] Univ Gafsa, Fac Sci Gafsa, Gafsa 2112, Tunisia
[3] CEA Genoscope, Inst Genom, F-91057 Evry, France
[4] Univ Evry, CNRS UMR 8030, F-91000 Evry, France
关键词
16S rRNA gene; Crenarchaeota; Thermoplasmata; Methanogens; Anaerobic sludge digester; PHYLOGENETIC ANALYSIS; ARCHAEAL COMMUNITIES; MICROBIAL DIVERSITY; ACTIVATED-SLUDGE; ABUNDANCE; BACTERIAL; DEFINITION; PROPOSAL; NOV;
D O I
10.1007/s11274-015-1834-1
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
16S rRNA Crenarchaeota and Thermoplasmata sequences retrieved from 22 anaerobic digesters were analysed. 4.8 and 0.53 % of archaeal sequences were simultaneously affiliated to these lineages. A core of 2 operational taxonomic units (OTUs) representing 0.6 to -33.6 % of all archaeal sequences were defined for the Crenarchaeotes and identified to already known but not yet cultivable organisms in almost half of the digesters sampled. For the Thermoplasmata, apparently less abundant with 0.7 to -4.7 % of the archaeal sequences, 3 OTUs were identified. We showed here that Crenarchaeotes coexist with methanogens and are particularly abundant when Arch I lineage (also called WSA2 by Hugenholtz) is dominant in digesters. Moreover, Thermoplasmata were detected when Crenarchaeota were present. Interactions between methanogens, Crenarchaeotea and Thermoplamata were thus discussed.
引用
收藏
页码:805 / 812
页数:8
相关论文
共 37 条
[1]   Functional bacterial and archaeal community structures of major trophic groups in a full-scale anaerobic sludge digester [J].
Ariesyady, Herto Dwi ;
Ito, Tsukasa ;
Okabe, Satoshi .
WATER RESEARCH, 2007, 41 (07) :1554-1568
[2]   Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences [J].
Barns, SM ;
Delwiche, CF ;
Palmer, JD ;
Pace, NR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (17) :9188-9193
[3]   Molecular phylogeny of archaea from soil [J].
Bintrim, SB ;
Donohue, TJ ;
Handelsman, J ;
Roberts, GP ;
Goodman, RM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (01) :277-282
[4]   Diversity and dynamics of microbial communities in engineered environments and their implications for process stability [J].
Briones, A ;
Raskin, L .
CURRENT OPINION IN BIOTECHNOLOGY, 2003, 14 (03) :270-276
[5]   Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota [J].
Brochier-Armanet, Celine ;
Boussau, Bastien ;
Gribaldo, Simonetta ;
Forterre, Patrick .
NATURE REVIEWS MICROBIOLOGY, 2008, 6 (03) :245-252
[6]  
Buckley DH, 1998, APPL ENVIRON MICROB, V64, P4333
[7]   Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester [J].
Chouari, R ;
Le Paslier, D ;
Daegelen, P ;
Ginestet, P ;
Weissenbach, J ;
Sghir, A .
ENVIRONMENTAL MICROBIOLOGY, 2005, 7 (08) :1104-1115
[8]   Molecular evidence for novel planctomycete diversity in a municipal wastewater treatment plant [J].
Chouari, R ;
Le Paslier, D ;
Daegelen, P ;
Ginestet, P ;
Weissenbach, J ;
Sghir, A .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (12) :7354-7363
[9]   Distribution, dynamics and in situ ecophysiology of Crenarchaeota in anaerobic wastewater treatment granular biofilms [J].
Collins, G ;
Mahony, T ;
McHugh, S ;
Gieseke, A ;
de Beer, D ;
O'Flaherty, V .
WATER SCIENCE AND TECHNOLOGY, 2005, 52 (07) :233-239
[10]   Microbial community structure and methanogenic activity during start-up of psychrophilic anaerobic digesters treating synthetic industrial wastewaters [J].
Collins, G ;
Woods, A ;
McHugh, S ;
Carton, MW ;
O'Flaherty, V .
FEMS MICROBIOLOGY ECOLOGY, 2003, 46 (02) :159-170