NMR in structure-based drug design

被引:8
作者
Carneiro, Marta G. [1 ]
Eiso, A. B. [1 ]
Theisgen, Stephan [1 ]
Siegal, Gregg [1 ]
机构
[1] ZoBio, JH Oortweg 19, NL-2333 CH Leiden, Netherlands
来源
STRUCTURE-BASED DRUG DESIGN: INSIGHTS FROM ACADEMIA AND INDUSTRY | 2017年 / 61卷 / 05期
关键词
INTRINSICALLY DISORDERED PROTEINS; AUTOMATED RESONANCE ASSIGNMENT; CHEMICAL-SHIFT; CONFORMATIONAL-CHANGES; LIGAND COMPLEXES; BINDING-SITES; 3D STRUCTURE; IDENTIFICATION; SPECTROSCOPY; INHIBITORS;
D O I
10.1042/EBC20170037
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
NMR spectroscopy is a powerful technique that can provide valuable structural information for drug discovery endeavors. Here, we discuss the strengths (and limitations) of NMR applications to structure-based drug discovery, highlighting the different levels of resolution and throughput obtainable. Additionally, the emerging field of paramagnetic NMR in drug discovery and recent developments in approaches to speed up and automate protein-observed NMR data collection and analysis are discussed.
引用
收藏
页码:485 / 493
页数:9
相关论文
共 67 条
[31]   Target Immobilization as a Strategy for NMR-Based Fragment Screening: Comparison of TINS, STD, and SPR for Fragment Hit Identification [J].
Kobayashi, Masakazu ;
Retra, Kim ;
Figaroa, Francis ;
Hollander, Johan G. ;
Ab, Eiso ;
Heetebrij, Robert J. ;
Irth, Hubertus ;
Siegal, Gregg .
JOURNAL OF BIOMOLECULAR SCREENING, 2010, 15 (08) :978-989
[32]   Structural Characterization of Intrinsically Disordered Proteins by NMR Spectroscopy [J].
Kosol, Simone ;
Contreras-Martos, Sara ;
Cedeno, Cesyen ;
Tompa, Peter .
MOLECULES, 2013, 18 (09) :10802-10828
[33]   Strategy for automated NMR resonance assignment of RNA: application to 48-nucleotide K10 [J].
Kraehenbuehl, Barbara ;
Lukavsky, Peter ;
Wider, Gerhard .
JOURNAL OF BIOMOLECULAR NMR, 2014, 59 (04) :231-240
[34]   Automated NMR resonance assignment strategy for RNA via the phosphodiester backbone based on high-dimensional through-bond APSY experiments [J].
Kraehenbuehl, Barbara ;
El Bakkali, Issam ;
Schmidt, Elena ;
Guentert, Peter ;
Wider, Gerhard .
JOURNAL OF BIOMOLECULAR NMR, 2014, 59 (02) :87-93
[35]   Identifying Protein Allosteric Transitions for Drug Discovery with 1D NMR [J].
Krimm, Isabelle .
CHEMMEDCHEM, 2017, 12 (12) :901-904
[36]   NMR-Based Design and Evaluation of Novel Bidentate Inhibitors of the Protein Tyrosine Phosphatase YopH [J].
Leone, Marilisa ;
Barile, Elisa ;
Vazquez, Jesus ;
Mei, Angel ;
Guiney, Donald ;
Dahl, Russel ;
Pellecchia, Maurizio .
CHEMICAL BIOLOGY & DRUG DESIGN, 2010, 76 (01) :10-16
[37]   Solution conformations of a linked construct of the Zika virus NS2B-NS3 protease [J].
Mahawaththa, Mithun C. ;
Pearce, Benjamin J. G. ;
Szabo, Monika ;
Graham, Bim ;
Klein, Christian D. ;
Nitsche, Christoph ;
Otting, Gottfried .
ANTIVIRAL RESEARCH, 2017, 142 :141-147
[38]   Spatial localization of ligand binding sites from electron current density surfaces calculated from NMR chemical shift perturbations [J].
McCoy, MA ;
Wyss, DF .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (39) :11758-11763
[39]   Lead generation of heat shock protein 90 inhibitors by a combination of fragment-based approach, virtual screening, and structure-based drug design [J].
Miura, Takaaki ;
Fukami, Takaaki A. ;
Hasegawa, Kiyoshi ;
Ono, Naomi ;
Suda, Atsushi ;
Shindo, Hidetoshi ;
Yoon, Dong-Oh ;
Kim, Sung-Jin ;
Na, Young-Jun ;
Aoki, Yuko ;
Shimma, Nobuo ;
Tsukuda, Takuo ;
Shiratori, Yasuhiko .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2011, 21 (19) :5778-5783
[40]   Nonuniform sampling and non-Fourier signal processing methods in multidimensional NMR [J].
Mobli, Mehdi ;
Hoch, Jeffrey C. .
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 2014, 83 :21-41