Graph-Constrained Group Testing

被引:69
作者
Cheraghchi, Mahdi [1 ]
Karbasi, Amin [2 ]
Mohajer, Soheil [3 ]
Saligrama, Venkatesh [4 ]
机构
[1] Carnegie Mellon Univ, Sch Comp Sci, Pittsburgh, PA 15213 USA
[2] Ecole Polytech Fed Lausanne EPFL, Sch Comp & Commun Sci, CH-1015 Lausanne, Switzerland
[3] Univ Calif Berkeley, Dept Elect Engn & Comp Sci, Berkeley, CA 94720 USA
[4] Boston Univ, Dept Elect & Comp Engn, Boston, MA 02215 USA
基金
美国国家科学基金会; 欧洲研究理事会;
关键词
Group testing; network tomography; random walks; sensor networks; sparse recovery;
D O I
10.1109/TIT.2011.2169535
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Nonadaptive group testing involves grouping arbitrary subsets of items into different pools. Each pool is then tested and defective items are identified. A fundamental question involves minimizing the number of pools required to identify at most d defective items. Motivated by applications in network tomography, sensor networks and infection propagation, a variation of group testing problems on graphs is formulated. Unlike conventional group testing problems, each group here must conform to the constraints imposed by a graph. For instance, items can be associated with vertices and each pool is any set of nodes that must be path connected. In this paper, a test is associated with a random walk. In this context, conventional group testing corresponds to the special case of a complete graph on vertices. For interesting classes of graphs a rather surprising result is obtained, namely, that the number of tests required to identify d defective items is substantially similar to what is required in conventional group testing problems, where no such constraints on pooling is imposed. Specifically, if T(n) corresponds to the mixing time of the graph G, it is shown that with m = O(d(2)T(2)(n) log(n/d)) nonadaptive tests, one can identify the defective items. Consequently, for the Erdos-Renyi random graph G(n, p), as well as expander graphs with constant spectral gap, it follows that m = O(d(2)log(3)n) nonadaptive tests are sufficient to identify d defective items. Next, a specific scenario is considered that arises in network tomography, for which it is shown that m = O(d(3)log(3) n) nonadaptive tests are sufficient to identify d defective items. Noisy counterparts of the graph constrained group testing problem are considered, for which parallel results are developed. We also briefly discuss extensions to compressive sensing on graphs.
引用
收藏
页码:248 / 262
页数:15
相关论文
共 20 条
  • [1] AIGNER M, 1988, WILEYTEUBNER SERIES
  • [2] [Anonymous], 2002, B EATCS
  • [3] [Anonymous], [No title captured], DOI DOI 10.1007/3-540-58338-6_
  • [4] ATIA G, 2009, CORR
  • [5] Combining geometry and combinatorics: a unified approach to sparse signal recovery
    Berinde, R.
    Gilbert, A. C.
    Indyk, P.
    Karloff, H.
    Strauss, M. J.
    [J]. 2008 46TH ANNUAL ALLERTON CONFERENCE ON COMMUNICATION, CONTROL, AND COMPUTING, VOLS 1-3, 2008, : 798 - +
  • [6] Bollobas B., 2001, RANDOM GRAPHS, V73
  • [7] CHERAGHCHI M, 2009, P ALL C COMM CONTR C
  • [8] The detection of defective members of large populations
    Dorfman, R
    [J]. ANNALS OF MATHEMATICAL STATISTICS, 1943, 14 : 436 - 440
  • [9] Du D Z, 2000, Combinatorial Group Testing and Its Applications
  • [10] Network tomography of binary network performance characteristics
    Duffield, Nick
    [J]. IEEE TRANSACTIONS ON INFORMATION THEORY, 2006, 52 (12) : 5373 - 5388