Mass Spectrometry-Based Fragmentation as an Identification Tool in Lignomics

被引:134
|
作者
Morreel, Kris [1 ,2 ]
Kim, Hoon [3 ,4 ]
Lu, Fachuang [3 ,4 ]
Dima, Oana [1 ,2 ]
Akiyama, Takuya [5 ]
Vanholme, Ruben [1 ,2 ]
Niculaes, Claudiu [1 ,2 ]
Goeminne, Geert [1 ,2 ]
Inze, Dirk [1 ,2 ]
Messens, Eric [1 ,2 ]
Ralph, John [3 ,4 ]
Boerjan, Wout [1 ,2 ]
机构
[1] VIB, Dept Plant Syst Biol, B-9052 Ghent, Belgium
[2] Univ Ghent, Dept Plant Biotechnol & Genet, B-9052 Ghent, Belgium
[3] Univ Wisconsin, Dept Biochem, Madison, WI 53706 USA
[4] Univ Wisconsin, DOE Great Lakes Bioenergy Res Ctr, Madison, WI 53706 USA
[5] Univ Tokyo, Grad Sch Agr & Life Sci, Dept Biomat Sci, Tokyo 1138657, Japan
关键词
O-METHYLTRANSFERASE; LIGNIN BIOSYNTHESIS; NEGATIVE-IONS; ELECTROSPRAY-IONIZATION; DOWN-REGULATION; POPLAR XYLEM; REVEALS; METABOLOMICS; METABOLISM; OLIGOLIGNOLS;
D O I
10.1021/ac100968g
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
The ensemble of all phenolics for which the biosynthesis is coregulated with lignin biosynthesis, i.e., metabolites from the general phenylpropanoid, monolignol, and (neo)-lignan biosynthetic pathways and their derivatives, as well as the lignin oligomers, is coined the lignome. In lignifying tissues, the lignome comprises a significant portion of the metabolome. However, as is true for metabolomics in general, the structural elucidation of unknowns represents the biggest challenge in characterizing the lignome. To minimize the necessity to purify unknowns for NMR analysis, it would be desirable to be able to extract structural information from liquid chromatography-mass spectrometry data directly. However, mass spectral libraries for metabolomics are scarce, and no libraries exist for the lignome. Therefore, elucidating the gas-phase fragmentation behavior of the major bonding types encountered in lignome-associated molecules would considerably advance the systematic characterization of the lignome. By comparative MS" analysis of a series of molecules belonging to the beta-aryl ether, benzodioxane, phenylcoumaran, and resinol groups, we succeeded in annotating typical fragmentations for each of these bonding structures as well as fragmentations that enabled the identification of the aromatic units involved in each bonding structure. Consequently, this work lays the foundation for a detailed characterization of the lignome in different plant species, mutants, and transgenics and for the MS-based sequencing of lignin oligomers and (neo)lignans.
引用
收藏
页码:8095 / 8105
页数:11
相关论文
共 50 条
  • [1] Novel mass spectrometry-based tool for genotypic identification of mycobacteria
    Lefmann, M
    Honisch, C
    Böcker, S
    Storm, N
    von Wintzingerode, F
    Schlötelburg, C
    Moter, A
    van den Boom, D
    Göbel, UB
    JOURNAL OF CLINICAL MICROBIOLOGY, 2004, 42 (01) : 339 - 346
  • [2] A map of mass spectrometry-based in silico fragmentation prediction and compound identification in metabolomics
    Krettler, Christoph A.
    Thallinger, Gerhard G.
    BRIEFINGS IN BIOINFORMATICS, 2021, 22 (06)
  • [3] Mass spectrometry-based cDNA profiling as a potential tool for human body fluid identification
    Donfack, Joseph
    Wiley, Anissa
    FORENSIC SCIENCE INTERNATIONAL-GENETICS, 2015, 16 : 112 - 120
  • [4] Investigation of mass spectrometry-based fragmentation patterns of new OXIZIDsynthetic cannabinoids
    Fan, Yilei
    Chen, Xianxin
    Xue, Jinfeng
    Wu, Hao
    Ke, Xing
    Xu, Yu
    Chinese Journal of Analysis Laboratory, 2024, 43 (01) : 57 - 63
  • [5] Mass Spectrometry-Based Intraoperative Tissue Identification in Neurosurgery
    Neidert, Marian Christoph
    Bozinov, Oliver
    WORLD NEUROSURGERY, 2013, 80 (06) : 683 - 684
  • [6] TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and characterization
    Kou, Qiang
    Xun, Likun
    Liu, Xiaowen
    BIOINFORMATICS, 2016, 32 (22) : 3495 - 3497
  • [7] Mass spectrometry-based proteomics: A useful tool for biomarker discovery?
    Gramolini, A. O.
    Peterman, S. M.
    Kislinger, T.
    CLINICAL PHARMACOLOGY & THERAPEUTICS, 2008, 83 (05) : 758 - 760
  • [8] A quantitative analysis software tool for mass spectrometry-based proteomics
    Park, Sung Kyu
    Venable, John D.
    Xu, Tao
    Yates, John R., III
    NATURE METHODS, 2008, 5 (04) : 319 - 322
  • [9] A quantitative analysis software tool for mass spectrometry-based proteomics
    Park S.K.
    Venable J.D.
    Xu T.
    Yates III J.R.
    Nature Methods, 2008, 5 (4) : 319 - 322