Complete chloroplast genome sequences of Sinosenecio baojingensis Ying Liu & QE Yang (Asteraceae)

被引:2
作者
Xie, Jie-Nan [1 ]
Wang, Da [1 ]
Peng, Jing-Yi [1 ]
Wang, Yi [1 ]
Zhou, Qiang [1 ]
机构
[1] Jishou Univ, Key Lab Plant Resources Conservat & Utilizat, Jishou, Hunan, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2022年 / 7卷 / 07期
基金
中国国家自然科学基金;
关键词
Asteraceae; complete chloroplast genome; phylogenetic analysis; Sinosenecio baojingensis;
D O I
10.1080/23802359.2022.2097026
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
In this study, we assembled and described the complete chloroplast genome (cp) of Sinosenecio baojingensis Ying Liu & Q.E. Yang (Asteraceae) for the first time. The cp genome is 151,315 bp in length and exhibits a typical quadripartite structure, consisting of a large single-copy (LSC) region of 83,445 bp, a small single-copy (SSC) region of 18,172 bp, and a pair of inverted repeat regions (IRs) of 24,849 bp. A total of 133 genes were annotated, including 88 protein-coding genes (one pseudo gene), 37 tRNA genes (tRNAs), and eight ribosomal RNA genes (rRNAs). Further, the phylogenetic analysis based on eight complete chloroplast genomes indicates that S. baojingensis is shown to be a sister to S. jishouensis. The complete chloroplast genome of S. baojingensis provides significant molecular markers for the studies on phylogeny and species identification of this genus.
引用
收藏
页码:1280 / 1281
页数:2
相关论文
共 10 条
[1]   The complete chloroplast genome sequence of strawberry (Fragaria X ananassa Duch.) and comparison with related species of Rosaceae [J].
Cheng, Hui ;
Li, Jinfeng ;
Zhang, Hong ;
Cai, Binhus ;
Gao, Zhihong ;
Qiao, Yushan ;
Mi, Lin .
PEERJ, 2017, 5 :e3919
[2]  
JEFFREY C, 1984, Kew Bulletin, V39, P205, DOI 10.2307/4110124
[3]  
Jin J., 2018, bioRxiv
[4]   MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].
Katoh, Kazutaka ;
Standley, Daron M. .
MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780
[5]  
Liu Y, 2009, BOT STUD, V50, P107
[6]  
Miller Mark A., 2010, 2010 Gateway Computing Environments Workshop (GCE 2010), DOI 10.1109/GCE.2010.5676129
[7]   RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies [J].
Stamatakis, Alexandros .
BIOINFORMATICS, 2014, 30 (09) :1312-1313
[8]   GeSeq - versatile and accurate annotation of organelle genomes [J].
Tillich, Michael ;
Lehwark, Pascal ;
Pellizzer, Tommaso ;
Ulbricht-Jones, Elena S. ;
Fischer, Axel ;
Bock, Ralph ;
Greiner, Stephan .
NUCLEIC ACIDS RESEARCH, 2017, 45 (W1) :W6-W11
[9]   Characterization of the complete chloroplast genome of Sinosenecio oldhamianus (Compositae) [J].
Xu, Jingjing ;
Gong, Yihua ;
Hao, Guoqian .
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02) :3496-3497
[10]   Complete chloroplast genome of Sinosenecio jishouensis DG Zhang, Ying Liu & Q. E. Yang (Asteraceae), a narrow endemic species in Wuling Mountain Region, China [J].
Zhou, Qiang ;
Ou-Yang, Jian-Hua ;
Xie, Jie-Nan ;
Sun, Yao ;
Dong, Ming-Yang .
MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (03) :983-984