Network diffusion for scalable embedding of massive single-cell ATAC-seq data

被引：8

作者：

Dong, Kangning ^{[1
,2
]}

Zhang, Shihua ^{[1
,2
,3
,4
]}

机构：

[1] Chinese Acad Sci, Acad Math & Syst Sci, RCSDS, NCMIS,CEMS, Beijing 100190, Peoples R China

[2] Univ Chinese Acad Sci, Sch Math Sci, Beijing 100049, Peoples R China

[3] Chinese Acad Sci, Ctr Excellence Anim Evolut & Genet, Kunming 650223, Yunnan, Peoples R China

[4] Univ Chinese Acad Sci, Hangzhou Inst Adv Study, Key Lab Syst Biol, Hangzhou 310024, Peoples R China

来源：

SCIENCE BULLETIN | 2021年 / 66卷 / 22期

基金：

国家重点研发计划; 中国国家自然科学基金;

关键词：

ACCESSIBILITY;

D O I：

10.1016/j.scib.2021.05.014

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

[No abstract available]

引用

页码：2271 / 2276

页数：6

共 15 条

[11] APEC: an accesson-based method for single-cell chromatin accessibility analysis [J].

Li, Bin ;

Li, Young ;

Li, Kun ;

Zhu, Lianbang ;

Yu, Qiaoni ;

Cai, Pengfei ;

Fang, Jingwen ;

Zhang, Wen ;

Du, Pengcheng ;

Jiang, Chen ;

Lin, Jun ;

Qu, Kun .

GENOME BIOLOGY, 2020, 21 (01)

[12] A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate [J].

Lin, Yin C. ;

Jhunjhunwala, Suchit ;

Benner, Christopher ;

Heinz, Sven ;

Welinder, Eva ;

Mansson, Robert ;

Sigvardsson, Mikael ;

Hagman, James ;

Espinoza, Celso A. ;

Dutkowski, Janusz ;

Ideker, Trey ;

Glass, Christopher K. ;

Murre, Cornelis .

NATURE IMMUNOLOGY, 2010, 11 (07) :635-U109

[13]

Schep AN, 2017, NAT METHODS, V14, P975, DOI [10.1038/nmeth.4401, 10.1038/NMETH.4401]

[14] Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease [J].

Szabo, Peter A. ;

Levitin, Hanna Mendes ;

Miron, Michelle ;

Snyder, Mark E. ;

Senda, Takashi ;

Yuan, Jinzhou ;

Cheng, Yim Ling ;

Bush, Erin C. ;

Dogra, Pranay ;

Thapa, Puspa ;

Farber, Donna L. ;

Sims, Peter A. .

NATURE COMMUNICATIONS, 2019, 10 (1)

[15] SCALE method for single-cell ATAC-seq analysis via latent feature extraction [J].

Xiong, Lei ;

Xu, Kui ;

Tian, Kang ;

Shao, Yanqiu ;

Tang, Lei ;

Gao, Ge ;

Zhang, Michael ;

Jiang, Tao ;

Zhang, Qiangfeng Cliff .

NATURE COMMUNICATIONS, 2019, 10 (1)

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