Thermal denaturation of a helicoidal DNA model

被引:79
|
作者
Barbi, M
Lepri, S
Peyrard, M
Theodorakopoulos, N
机构
[1] Univ Paris 06, Phys Theor Liquides Lab, F-75252 Paris 05, France
[2] UdR Firenze, Ist Nazl Fis Mat, I-50019 Sesto Fiorentino, Italy
[3] Ecole Normale Super Lyon, Phys Lab, F-69364 Lyon 07, France
[4] Natl Hellen Res Fdn, Inst Theoret & Phys Chem, GR-11635 Athens, Greece
来源
PHYSICAL REVIEW E | 2003年 / 68卷 / 06期
关键词
D O I
10.1103/PhysRevE.68.061909
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
We study the static and dynamical properties of DNA in the vicinity of its melting transition, i.e., the separation of the two strands upon heating. The investigation is based on a simple mechanical model which includes the helicoidal geometry of the molecule and allows an exact numerical evaluation of its thermodynamical properties. Dynamical simulations of long-enough molecular segments allow the study of the structure factors and of the properties of the denaturated regions. Simulations of finite chains display the hallmarks of a first order transition for sufficiently long-ranged stacking forces although a study of the model's "universality class" strongly suggests the presence of an "underlying" continuous transition.
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页数:14
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