Genome-Wide Identification, Evolutionary Analysis, and Stress Responses of the GRAS Gene Family in Castor Beans

被引:69
作者
Xu, Wei [1 ,2 ,3 ]
Chen, Zexi [1 ]
Ahmed, Naeem [2 ,4 ]
Han, Bing [2 ,3 ]
Cui, Qinghua [1 ]
Liu, Aizhong [2 ]
机构
[1] Yunnan Univ, Coll Life Sci, Kunming 650091, Peoples R China
[2] Chinese Acad Sci, Kunming Inst Bot, Dept Econ Plants & Biotechnol, Yunnan Key Lab Wild Plant Resources, Kunming 650204, Peoples R China
[3] Univ Chinese Acad Sci, Beijing 100049, Peoples R China
[4] Univ Karachi, Dept Bot, Karachi 75270, Pakistan
基金
中国国家自然科学基金;
关键词
GRAS gene family; castor beans; gene expression; abiotic stress; phylogenetic relationship; SCARECROW-LIKE; 3; SIGNAL-TRANSDUCTION; ARABIDOPSIS; MEMBER; EXPRESSION; REGULATOR; MECHANISM; PROTEINS; DELLA; RICE;
D O I
10.3390/ijms17071004
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Plant-specific GRAS transcription factors play important roles in regulating growth, development, and stress responses. Castor beans (Ricinus communis) are important non-edible oilseed plants, cultivated worldwide for its seed oils and its adaptability to growth conditions. In this study, we identified and characterized a total of 48 GRAS genes based on the castor bean genome. Combined with phylogenetic analysis, the castor bean GRAS members were divided into 13 distinct groups. Functional divergence analysis revealed the presence of mostly Type-I functional divergence. The gene structures and conserved motifs, both within and outside the GRAS domain, were characterized. Gene expression analysis, performed in various tissues and under a range of abiotic stress conditions, uncovered the potential functions of GRAS members in regulating plant growth development and stress responses. The results obtained from this study provide valuable information toward understanding the potential molecular mechanisms of GRAS proteins in castor beans. These findings also serve as a resource for identifying the genes that allow castor beans to grow in stressful conditions and to enable further breeding and genetic improvements in agriculture.
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页数:16
相关论文
共 59 条
[11]   Identification and characterization of two new members of the GRAS gene family in rice responsive to N-acetylchitooligosaccharide elicitor [J].
Day, RB ;
Shibuya, N ;
Minami, E .
BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION, 2003, 1625 (03) :261-268
[12]   The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root [J].
DiLaurenzio, L ;
WysockaDiller, J ;
Malamy, JE ;
Pysh, L ;
Helariutta, Y ;
Freshour, G ;
Hahn, MG ;
Feldmann, KA ;
Benfey, PN .
CELL, 1996, 86 (03) :423-433
[13]   Arabidopsis Homologs of the Petunia HAIRY MERISTEM Gene Are Required for Maintenance of Shoot and Root Indeterminacy [J].
Engstrom, Eric M. ;
Andersen, Carl M. ;
Gumulak-Smith, Juliann ;
Hu, John ;
Orlova, Evguenia ;
Sozzani, Rosangela ;
Bowman, John L. .
PLANT PHYSIOLOGY, 2011, 155 (02) :735-750
[14]   Molecular analysis of the LATERAL SUPPRESSOR gene in Arabidopsis reveals a conserved control mechanism for axillary meristem formation [J].
Greb, T ;
Clarenz, O ;
Schäfer, E ;
Müller, D ;
Herrero, R ;
Schmitz, G ;
Theres, K .
GENES & DEVELOPMENT, 2003, 17 (09) :1175-1187
[15]   Structural and Functional Analysis of the GRAS Gene Family in Grapevine Indicates a Role of GRAS Proteins in the Control of Development and Stress Responses [J].
Grimplet, Jerome ;
Agudelo-Romero, Patricia ;
Teixeira, Rita T. ;
Martinez-Zapater, Jose M. ;
Fortes, Ana M. .
FRONTIERS IN PLANT SCIENCE, 2016, 7
[16]   An Update of DIVERGE Software for Functional Divergence Analysis of Protein Family [J].
Gu, Xun ;
Zou, Yangyun ;
Su, Zhixi ;
Huang, Wei ;
Zhou, Zhan ;
Arendsee, Zebulun ;
Zeng, Yanwu .
MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (07) :1713-1719
[17]   A signature motif in transcriptional co-activators mediates binding to nuclear receptor [J].
Heery, DM ;
Kalkhoven, E ;
Hoare, S ;
Parker, MG .
NATURE, 1997, 387 (6634) :733-736
[18]   The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling [J].
Helariutta, Y ;
Fukaki, H ;
Wysocka-Diller, J ;
Nakajima, K ;
Jung, J ;
Sena, G ;
Hauser, MT ;
Benfey, PN .
CELL, 2000, 101 (05) :555-567
[19]   Funneling of gibberellin signaling by the GRAS transcription regulator SCARECROW-LIKE 3 in the Arabidopsis root [J].
Heo, Jung-Ok ;
Chang, Kwang Suk ;
Kim, In A. ;
Lee, Mi-Hyun ;
Lee, Shin Ae ;
Song, Sang-Kee ;
Lee, Myeong Min ;
Lim, Jun .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (05) :2166-2171
[20]   GRAS Proteins Form a DNA Binding Complex to Induce Gene Expression during Nodulation Signaling in Medicago truncatula [J].
Hirsch, Sibylle ;
Kim, Jiyoung ;
Munoz, Alfonso ;
Heckmann, Anne B. ;
Downie, J. Allan ;
Oldroyd, Giles E. D. .
PLANT CELL, 2009, 21 (02) :545-557