Cocrystals of pyrazinamide with p-toluenesulfonic and ferulic acids: DFT investigations and molecular docking studies

被引:53
作者
Al-Otaibi, Jamelah S. [1 ]
Mary, Y. Sheena [2 ]
Mary, Y. Shyma [2 ]
Panicker, C. Yohannan [2 ]
Thomas, Renjith [3 ]
机构
[1] Princess Nourah Bint Abdulrahman Univ, Coll Sci, Dept Chem, Riyadh, Saudi Arabia
[2] Fatima Mata Natl Coll Autonomous, Dept Phys, Kollam, Kerala, India
[3] St Berchmans Coll Autonomous, Dept Chem, Changanassery, Kerala, India
关键词
DFr; Cocrystals of pyrazinamide; FT-IR; Molecular docking; ANTI-TUBERCULAR ACTIVITY; FT-IR; DYNAMICS SIMULATIONS; 1ST-ORDER HYPERPOLARIZABILITY; PHARMACEUTICAL COCRYSTALS; SPECTROSCOPIC ANALYSES; CONDENSED OXADIAZOLE; CHEMICAL-REACTIVITY; SINGLE-CRYSTAL; NBO ANALYSIS;
D O I
10.1016/j.molstruc.2018.08.055
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Cocrystals of pyrazinamide with p-toluenesulfonic acid (PZTSA) and ferulic acid (PZFER) are investigated by density functional calculations to find geometrical parameters, wavenumbers and different molecular properties. The vibrational modes associated with the phenyl and pyrazine rings have small changes during the cocrystal formation, while changes are associated with the amide group of pyrazinamide, hydroxyl and carboxylic groups of ferulic acid and SO3 group of PZTSA. Using density functional theory method the molecular geometries of the co-crystals were optimized in the ground state and a comparison is made with the reported experimental data. The theoretically obtained wavenumbers are assigned by means of potential energy distribution. The downshift of different modes in the infrared spectrum is due to hydrogen bonding and this is supported by the strong hyper conjugative interactions given by natural bond orbital analysis. HOMO is delocalized over the entire molecule except phenyl ring and methyl group and LUMO is delocalized over the entire molecule except C=ONH2 group for PZTSA while for PZFER, HOMO and LUMO are delocalized over the ferulic acid. From the MEP plot, electron rich regions are mainly localized over C=O and SO3 groups of PZTSA while for PZFER, all the oxygen atoms electron rich regions. The first hyperpolarizability of PZTSA and PZFER are 5.99 and 89.66 times that of urea. Different molecular properties like, global chemical descriptors, frontier molecular orbital analysis, nonlinear optical properties and natural bond orbital analysis are also discussed in the present work. The different functional groups in the title compounds are identified by configurations markers using the theoretical VCD spectra analysis. Light harvesting efficiency analysis shows that PZFER is suitable for photo sensitizers in DSSC's. Docking results suggest that the compounds might exhibit inhibitory activity against mycobacterium tuberculosis type II and the compounds can be developed as a new anti-TB drug. (C) 2018 Elsevier B.V. All rights reserved.
引用
收藏
页码:916 / 926
页数:11
相关论文
共 54 条
[1]   Quantum mechanical, spectroscopic and docking studies of 2-Amino-3-bromo-5-nitropyridine by Density Functional Method [J].
Abraham, Christina Susan ;
Prasana, Johanan Christian ;
Muthu, S. .
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2017, 181 :153-163
[2]   Synthesis, spectroscopic analyses, chemical reactivity and molecular docking study and anti-tubercular activity of pyrazine and condensed oxadiazole derivatives [J].
Al-Tamimi, Abdul-Malek S. ;
Mary, Y. Sheena ;
Miniyar, Pankaj B. ;
Al-Wahaibi, Lamya H. ;
El-Emam, Ali A. ;
Armakovic, Stevan ;
Armakovic, Sanja J. .
JOURNAL OF MOLECULAR STRUCTURE, 2018, 1164 :459-469
[3]   Study on the structure, vibrational analysis and molecular docking of fluorophenyl derivatives using FT-IR and density functional theory computations [J].
Al-Tamimi, Abdul-Malek S. ;
Mary, Y. Sheena ;
Hassan, Hanan M. ;
Resmi, K. S. ;
El-Emam, Ali A. ;
Narayana, B. ;
Sarojini, B. K. .
JOURNAL OF MOLECULAR STRUCTURE, 2018, 1164 :172-179
[4]  
[Anonymous], EPIDEMIOLOGY HOST FA
[5]   Spectroscopic investigations and computational study of sulfur trioxide-pyridine complex [J].
Anto, P. L. ;
Anto, Ruby John ;
Varghese, Hema Tresa ;
Panicker, C. Yohannan ;
Philip, Daizy ;
Andrade, Gustavo F. S. ;
Brolo, Alexandre G. .
JOURNAL OF RAMAN SPECTROSCOPY, 2011, 42 (09) :1812-1819
[6]  
Balakrishnan S., 2008, EJ PHARM THER, V1, P61
[7]  
Bassler, 1991, SPECTROMETRIC IDENTI, V5
[8]   Vibrational spectroscopic analysis of cyanopyrazine-2-carboxamide derivatives and investigation of their reactive properties by DFT calculations and molecular dynamics simulations [J].
Beegum, Shargina ;
Mary, Y. Sheena ;
Varghese, Herria Tresa ;
Panicker, C. Yohannan ;
Armakovic, Stevan ;
Armakovic, Sanja J. ;
Zitko, Jan ;
Dolezal, Martin ;
Van Alsenoy, C. .
JOURNAL OF MOLECULAR STRUCTURE, 2017, 1131 :1-15
[9]   Spectroscopic and theoretical characterization of 2-(4-methoxyphenyl)-4,5-dimethyl-1H-imidazole 3-oxide [J].
Benzon, K. B. ;
Varghese, Hema Tresa ;
Panicker, C. Yohannan ;
Pradhan, Kiran ;
Tiwary, Bipransh Kumar ;
Nanda, Ashis Kumar ;
Van Alsenoy, C. .
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2015, 151 :965-979
[10]   Pharmaceutical cocrystals: walking the talk [J].
Bolla, Geetha ;
Nangia, Ashwini .
CHEMICAL COMMUNICATIONS, 2016, 52 (54) :8342-8360