Estimating the decomposition of predictive information in multivariate systems

被引:72
作者
Faes, Luca [1 ,2 ]
Kugiumtzis, Dimitris [3 ]
Nollo, Giandomenico [1 ,2 ]
Jurysta, Fabrice [4 ]
Marinazzo, Daniele [5 ]
机构
[1] Univ Trento, BIOtech, Dept Ind Engn, I-38122 Trento, Italy
[2] PAT FBK, IRCS Program, I-38122 Trento, Italy
[3] Aristotle Univ Thessaloniki, Dept Elect & Comp Engn, Thessaloniki 54124, Greece
[4] Univ Libre Bruxelles, Sleep Lab, Dept Psychiat, Erasme Acad Hosp, B-1050 Brussels, Belgium
[5] Univ Ghent, Dept Data Anal, B-9000 Ghent, Belgium
来源
PHYSICAL REVIEW E | 2015年 / 91卷 / 03期
关键词
HEART-RATE-VARIABILITY; TRANSFER ENTROPY; APPROXIMATE ENTROPY; GRANGER CAUSALITY; SLEEP EEG; MECHANISMS; TOOL; OSCILLATIONS; PERIOD;
D O I
10.1103/PhysRevE.91.032904
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
In the study of complex systems from observed multivariate time series, insight into the evolution of one system may be under investigation, which can be explained by the information storage of the system and the information transfer from other interacting systems. We present a framework for the model-free estimation of information storage and information transfer computed as the terms composing the predictive information about the target of a multivariate dynamical process. The approach tackles the curse of dimensionality employing a nonuniform embedding scheme that selects progressively, among the past components of the multivariate process, only those that contribute most, in terms of conditional mutual information, to the present target process. Moreover, it computes all information-theoretic quantities using a nearest-neighbor technique designed to compensate the bias due to the different dimensionality of individual entropy terms. The resulting estimators of prediction entropy, storage entropy, transfer entropy, and partial transfer entropy are tested on simulations of coupled linear stochastic and nonlinear deterministic dynamic processes, demonstrating the superiority of the proposed approach over the traditional estimators based on uniform embedding. The framework is then applied to multivariate physiologic time series, resulting in physiologically well-interpretable information decompositions of cardiovascular and cardiorespiratory interactions during head-up tilt and of joint brain-heart dynamics during sleep.
引用
收藏
页数:16
相关论文
共 64 条
  • [1] The Relation between Granger Causality and Directed Information Theory: A Review
    Amblard, Pierre-Olivier
    Michel, Olivier J. J.
    [J]. ENTROPY, 2013, 15 (01) : 113 - 143
  • [2] [Anonymous], 2006, Elements of Information Theory
  • [3] The MVGC multivariate Granger causality toolbox: A new approach to Granger-causal inference
    Barnett, Lionel
    Seth, Anil K.
    [J]. JOURNAL OF NEUROSCIENCE METHODS, 2014, 223 : 50 - 68
  • [4] Granger Causality and Transfer Entropy Are Equivalent for Gaussian Variables
    Barnett, Lionel
    Barrett, Adam B.
    Seth, Anil K.
    [J]. PHYSICAL REVIEW LETTERS, 2009, 103 (23)
  • [5] Multivariate Granger causality and generalized variance
    Barrett, Adam B.
    Barnett, Lionel
    Seth, Anil K.
    [J]. PHYSICAL REVIEW E, 2010, 81 (04):
  • [6] RESPIRATORY SINUS ARRHYTHMIA - AUTONOMIC ORIGINS, PHYSIOLOGICAL-MECHANISMS, AND PSYCHOPHYSIOLOGICAL IMPLICATIONS
    BERNTSON, GG
    CACIOPPO, JT
    QUIGLEY, KS
    [J]. PSYCHOPHYSIOLOGY, 1993, 30 (02) : 183 - 196
  • [7] SYNCHRONIZATION AS A PROCESS OF SHARING AND TRANSFERRING INFORMATION
    Bollt, Erik M.
    [J]. INTERNATIONAL JOURNAL OF BIFURCATION AND CHAOS, 2012, 22 (11):
  • [8] Inverse coupling between ultradian oscillations in delta wave activity and heart rate variability during sleep
    Brandenberger, G
    Ehrhart, J
    Piquard, F
    Simon, C
    [J]. CLINICAL NEUROPHYSIOLOGY, 2001, 112 (06) : 992 - 996
  • [9] Framework to study dynamic dependencies in networks of interacting processes
    Chicharro, Daniel
    Ledberg, Anders
    [J]. PHYSICAL REVIEW E, 2012, 86 (04)
  • [10] Using transfer entropy to measure information flows between financial markets
    Dimpfl, Thomas
    Peter, Franziska Julia
    [J]. STUDIES IN NONLINEAR DYNAMICS AND ECONOMETRICS, 2013, 17 (01) : 85 - 102