iHOP web services

被引:75
作者
Fernandez, Jose M. [1 ]
Hoffmann, Robert [1 ]
Valencia, Alfonso [1 ]
机构
[1] MIT, Comp Sci & Artificial Intelligence Lab, Decentralized Informat Grp, Cambridge, MA 02139 USA
关键词
D O I
10.1093/nar/gkm298
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
iHOP provides fast, accurate, comprehensive, and up-to-date summary information on more than 80 000 biological molecules by automatically extracting key sentences from millions of PubMed documents. Its intuitive user interface and navigation scheme have made iHOP extremely successful among biologists, counting more than 500 000 visits per month ( iHOP access statistics: http://www.ihop-net.org/UniPub/iHOP/info/logs/). Here we describe a public programmatic API that enables the integration of main iHOP functionalities in bioinformatic programs and workflows.
引用
收藏
页码:W21 / W26
页数:6
相关论文
共 20 条
[1]   The Distributed Annotation System [J].
Dowell, Robin D. ;
Jokerst, Rodney M. ;
Day, Allen ;
Eddy, Sean R. ;
Stein, Lincoln .
BMC BIOINFORMATICS, 2001, 2 (1)
[2]  
Fielding R.T., 2000, THESIS U CALIF
[3]   IHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website [J].
Good, Benjamin M. ;
Kawas, Edward A. ;
Kuo, Byron Yu-Lin ;
Wilkinson, Mark D. .
BMC BIOINFORMATICS, 2006, 7 (1)
[4]   Overview of BioCreAtIvE: critical assessment of information extraction for biology [J].
Hirschman, L ;
Yeh, A ;
Blaschke, C ;
Valencia, A .
BMC BIOINFORMATICS, 2005, 6 (Suppl 1)
[5]   Overview of BioCreAtIvE task IB: normalized gene lists [J].
Hirschman, L ;
Colosimo, M ;
Morgan, A ;
Yeh, A .
BMC BIOINFORMATICS, 2005, 6 (Suppl 1)
[6]  
HOFFMAN R, 2005, SCI STKE, V21
[7]   Implementing the iHOP concept for navigation of biomedical literature [J].
Hoffmann, R ;
Valencia, A .
BIOINFORMATICS, 2005, 21 :252-258
[8]   A gene network for navigating the literature [J].
Hoffmann, R ;
Valencia, A .
NATURE GENETICS, 2004, 36 (07) :664-664
[9]   Taverna: a tool for building and running workflows of services [J].
Hull, Duncan ;
Wolstencroft, Katy ;
Stevens, Robert ;
Goble, Carole ;
Pocock, Mathew R. ;
Li, Peter ;
Oinn, Tom .
NUCLEIC ACIDS RESEARCH, 2006, 34 :W729-W732
[10]  
JINDONG K, 2004, P INT WORKSH NAT LAN