Skin microbiome: genomics-based insights into the diversity and role of skin microbes

被引:198
作者
Kong, Heidi H. [1 ]
机构
[1] NCI, Dermatol Branch, Ctr Canc Res, NIH, Bethesda, MD 20892 USA
关键词
CUTANEOUS BACTERIAL; NASAL COLONIZATION; MOLECULAR ANALYSIS; WOUND MICROBIOTA; GUT MICROBIOME; BODY HABITATS; LEG ULCERS; INFECTIONS; DEFENSE; PROJECT;
D O I
10.1016/j.molmed.2011.01.013
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Recent advances in DNA sequencing methodology have facilitated studies of human skin microbes that circumvent difficulties in isolating and characterizing fastidious microbes. Sequence-based approaches have identified a greater diversity of cutaneous bacteria than studies using traditional cultivation techniques. However, improved sequencing technologies and analytical methods are needed to study all skin microbes, including bacteria, archaea, fungi, viruses and mites, and how they interact with each other and their human hosts. This review discusses current skin microbiome research, with a primary focus on bacteria, and the challenges facing investigators striving to understand how skin microorganisms contribute to health and disease.
引用
收藏
页码:320 / 328
页数:9
相关论文
共 60 条
[1]  
[Anonymous], COCHRANE DATABASE SY
[2]   High prevalence of Staphylococcus aureus cultivation and superantigen production in patients with psoriasis [J].
Balci, Didem Didar ;
Duran, Nizami ;
Ozer, Burcin ;
Gunesacar, Ramazan ;
Onlen, Yusuf ;
Yenin, Julide Zehra .
EUROPEAN JOURNAL OF DERMATOLOGY, 2009, 19 (03) :238-242
[3]   Acne is not associated with yet-uncultured bacteria [J].
Bek-Thomsen, M. ;
Lomholt, H. B. ;
Kilian, M. .
JOURNAL OF CLINICAL MICROBIOLOGY, 2008, 46 (10) :3355-3360
[4]   QIIME allows analysis of high-throughput community sequencing data [J].
Caporaso, J. Gregory ;
Kuczynski, Justin ;
Stombaugh, Jesse ;
Bittinger, Kyle ;
Bushman, Frederic D. ;
Costello, Elizabeth K. ;
Fierer, Noah ;
Pena, Antonio Gonzalez ;
Goodrich, Julia K. ;
Gordon, Jeffrey I. ;
Huttley, Gavin A. ;
Kelley, Scott T. ;
Knights, Dan ;
Koenig, Jeremy E. ;
Ley, Ruth E. ;
Lozupone, Catherine A. ;
McDonald, Daniel ;
Muegge, Brian D. ;
Pirrung, Meg ;
Reeder, Jens ;
Sevinsky, Joel R. ;
Tumbaugh, Peter J. ;
Walters, William A. ;
Widmann, Jeremy ;
Yatsunenko, Tanya ;
Zaneveld, Jesse ;
Knight, Rob .
NATURE METHODS, 2010, 7 (05) :335-336
[5]   Skin microflora and bacterial infections of the skin [J].
Chiller, K ;
Selkin, BA ;
Murakawa, GJ .
JOURNAL OF INVESTIGATIVE DERMATOLOGY SYMPOSIUM PROCEEDINGS, 2001, 6 (03) :170-174
[6]   Skin microbiota: a source of disease or defence? [J].
Cogen, A. L. ;
Nizet, V. ;
Gallo, R. L. .
BRITISH JOURNAL OF DERMATOLOGY, 2008, 158 (03) :442-455
[7]   Selective Antimicrobial Action Is Provided by Phenol-Soluble Modulins Derived from Staphylococcus epidermidis, a Normal Resident of the Skin [J].
Cogen, Anna L. ;
Yamasaki, Kenshi ;
Sanchez, Katheryn M. ;
Dorschner, Robert A. ;
Lai, Yuping ;
MacLeod, Daniel T. ;
Torpey, Justin W. ;
Otto, Michael ;
Nizet, Victor ;
Kim, Judy E. ;
Gallo, Richard L. .
JOURNAL OF INVESTIGATIVE DERMATOLOGY, 2010, 130 (01) :192-200
[8]   The Ribosomal Database Project: improved alignments and new tools for rRNA analysis [J].
Cole, J. R. ;
Wang, Q. ;
Cardenas, E. ;
Fish, J. ;
Chai, B. ;
Farris, R. J. ;
Kulam-Syed-Mohideen, A. S. ;
McGarrell, D. M. ;
Marsh, T. ;
Garrity, G. M. ;
Tiedje, J. M. .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D141-D145
[9]   Bacterial Community Variation in Human Body Habitats Across Space and Time [J].
Costello, Elizabeth K. ;
Lauber, Christian L. ;
Hamady, Micah ;
Fierer, Noah ;
Gordon, Jeffrey I. ;
Knight, Rob .
SCIENCE, 2009, 326 (5960) :1694-1697
[10]   THE FUNGAL GENOME INITIATIVE AND LESSONS LEARNED FROM GENOME SEQUENCING [J].
Cuomo, Christina A. ;
Birren, Bruce W. .
METHODS IN ENZYMOLOGY, VOL 470: GUIDE TO YEAST GENETICS:: FUNCTIONAL GENOMICS, PROTEOMICS, AND OTHER SYSTEMS ANALYSIS, 2ND EDITION, 2010, 470 :833-855