SwissBioPics - an interactive library of cell images for the visualization of subcellular location data

被引:7
|
作者
Le Mercier, Philippe [1 ]
Bolleman, Jerven [1 ]
de Castro, Edouard [1 ]
Gasteiger, Elisabeth [1 ]
Bansal, Parit [1 ]
Auchincloss, Andrea H. [1 ]
Boutet, Emmanuel [1 ]
Breuza, Lionel [1 ]
Casals-Casas, Cristina [1 ]
Estreicher, Anne [1 ]
Feuermann, Marc [1 ]
Lieberherr, Damien [1 ]
Rivoire, Catherine [1 ]
Pedruzzi, Ivo [1 ]
Redaschi, Nicole [1 ]
Bridge, Alan [1 ]
机构
[1] CMU, Swiss Prot Grp, SIB Swiss Inst Bioinformat, 1 Rue Michel Servet, CH-1211 Geneva 4, Switzerland
来源
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION | 2022年 / 2022卷
关键词
BIOLOGICAL DATA;
D O I
10.1093/database/baac026
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
SwissBioPics (www.swissbiopics.org) is a freely available resource of interactive, high-resolution cell images designed for the visualization of subcellular location data. SwissBioPics provides images describing cell types from all kingdoms of life-from the specialized muscle, neuronal and epithelial cells of animals, to the rods, cocci, clubs and spirals of prokaryotes. All cell images in SwissBioPics are drawn in Scalable Vector Graphics (SVG), with each subcellular location tagged with a unique identifier from the controlled vocabulary of subcellular locations and organelles of UniProt (https://www.uniprot.org/locations/). Users can search and explore SwissBioPics cell images through our website, which provides a platform for users to learn more about how cells are organized. A web component allows developers to embed SwissBioPics images in their own websites, using the associated JavaScript and a styling template, and to highlight subcellular locations and organelles by simply providing the web component with the appropriate identifier(s) from the UniProt-controlled vocabulary or the 'Cellular Component' branch of the Gene Ontology (www.geneontology.org), as well as an organism identifier from the National Center for Biotechnology Information taxonomy (https://www.ncbi.nlm.nih.gov/taxonomy). The UniProt website now uses SwissBioPics to visualize the subcellular locations and organelles where proteins function. SwissBioPics is freely available for anyone to use under a Creative Commons Attribution 4.0 International (CC BY 4.0) license.
引用
收藏
页数:5
相关论文
共 50 条
  • [1] Unipept Visualizations: an interactive visualization library for biological data
    Verschaffelt, Pieter
    Collier, James
    Botzki, Alexander
    Martens, Lennart
    Dawyndt, Peter
    Mesuere, Bart
    BIOINFORMATICS, 2022, 38 (02) : 562 - 563
  • [2] VerXCombo: An interactive data visualization of popular library version combinations
    Yano, Yuki
    Kula, Raula Gaikovina
    Ishio, Takashi
    Inoue, Katsuro
    2015 IEEE 23RD INTERNATIONAL CONFERENCE ON PROGRAM COMPREHENSION ICPC 2015, 2015, : 291 - 294
  • [3] Interactive data visualization
    Alexander, Joanna, 1600, (05):
  • [4] INTERACTIVE VISUALIZATION OF RETINAL ASTROCYTE IMAGES
    Suwannatat, P.
    Luna, G.
    Ruttenberg, B.
    Raviv, R.
    Lewis, G.
    Fisher, S. K.
    Hoellerer, T.
    2011 8TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, 2011, : 242 - 245
  • [5] phylotree.js - a JavaScript library for application development and interactive data visualization in phylogenetics
    Stephen D. Shank
    Steven Weaver
    Sergei L. Kosakovsky Pond
    BMC Bioinformatics, 19
  • [6] AN INTERACTIVE DATA VISUALIZATION SYSTEM
    THALMANN, D
    SOFTWARE-PRACTICE & EXPERIENCE, 1984, 14 (03): : 277 - 290
  • [7] Scalable Interactive Data Visualization
    Chen, Florian
    Gaertner, Thomas
    MACHINE LEARNING AND KNOWLEDGE DISCOVERY IN DATABASES-RESEARCH TRACK AND DEMO TRACK, PT VIII, ECML PKDD 2024, 2024, 14948 : 429 - 433
  • [8] Interactive Visualization of Big Data
    Godfrey, Parke
    Gryz, Jarek
    Lasek, Piotr
    Razavi, Nasim
    BEYOND DATABASES, ARCHITECTURES AND STRUCTURES, BDAS 2016, 2016, 613 : 3 - 22
  • [9] Sensemaking with Interactive Data Visualization
    Barbulescu, Alina
    Stoica, Florin
    Stoica, Laura Florentina
    VISION 2020: INNOVATION MANAGEMENT, DEVELOPMENT SUSTAINABILITY, AND COMPETITIVE ECONOMIC GROWTH, 2016, VOLS I - VII, 2016, : 3213 - 3228
  • [10] Cell Cycle Dependence of Protein Subcellular Location Inferred from Static, Asynchronous Images
    Buck, Taraz E.
    Rao, Arvind
    Coelho, Luis Pedro
    Fuhrman, Margaret H.
    Jarvik, Jonathan W.
    Berget, Peter B.
    Murphy, Robert F.
    2009 ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOLS 1-20, 2009, : 1016 - +