RAS oncogenic activity predicts response to chemotherapy and outcome in lung adenocarcinoma

被引:19
作者
East, Philip [1 ]
Kelly, Gavin P. [1 ]
Biswas, Dhruva [2 ]
Marani, Michaela [3 ]
Hancock, David C. [3 ]
Creasy, Todd [4 ]
Sachsenmeier, Kris [5 ]
Swanton, Charles [2 ]
Downward, Julian [3 ,6 ]
Trecesson, Sophie de Carne [3 ]
机构
[1] Francis Crick Inst, Bioinformat & Biostat, 1 Midland Rd, London NW1 1AT, England
[2] Francis Crick Inst, Canc Evolut & Genome Instabil Lab, 1 Midland Rd, London NW1 1AT, England
[3] Francis Crick Inst, Oncogene Biol Lab, 1 Midland Rd, London NW1 1AT, England
[4] AstraZeneca, Oncol Data Sci Oncol Res & Dev, 200 Orchard Ridge Dr, Gaithersburg, MD 20878 USA
[5] AstraZeneca, Oncol Res & Dev, 35 Gatehouse Dr, Waltham, MA 02451 USA
[6] Inst Canc Res, Lung Canc Grp, 237 Fulham Rd, London SW3 6JB, England
基金
英国医学研究理事会; 英国惠康基金; 欧洲研究理事会;
关键词
GENE-EXPRESSION SIGNATURE; KRAS MUTATION STATUS; PATHWAY SIGNATURES; SIGNALING PATHWAYS; POOLED ANALYSIS; CANCER; GROWTH; INDUCTION; LANDSCAPE; THERAPY;
D O I
10.1038/s41467-022-33290-0
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Activating mutations in KRAS occur in 32% of lung adenocarcinomas (LUAD). Despite leading to aggressive disease and resistance to therapy in preclinical studies, the KRAS mutation does not predict patient outcome or response to treatment, presumably due to additional events modulating RAS pathways. To obtain a broader measure of RAS pathway activation, we developed RAS84, a transcriptional signature optimised to capture RAS oncogenic activity in LUAD. We report evidence of RAS pathway oncogenic activation in 84% of LUAD, including 65% KRAS wild-type tumours, falling into four groups characterised by coincident alteration of STK11/LKB1, TP53 or CDKN2A, suggesting that the classifications developed when considering only KRAS mutant tumours have significance in a broader cohort of patients. Critically, high RAS activity patient groups show adverse clinical outcome and reduced response to chemotherapy. Patient stratification using oncogenic RAS transcriptional activity instead of genetic alterations could ultimately assist in clinical decision-making.
引用
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页数:17
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