Differential processing of HIV envelope glycans on the virus and soluble recombinant trimer

被引:101
作者
Cao, Liwei [1 ,2 ,3 ,4 ]
Pauthner, Matthias [2 ,3 ,4 ]
Andrabi, Raiees [2 ,3 ,4 ]
Rantalainen, Kimmo [3 ,4 ,5 ]
Berndsen, Zachary [3 ,4 ,5 ]
Diedrich, Jolene K. [1 ]
Menis, Sergey [2 ,3 ,4 ]
Sok, Devin [2 ,3 ,4 ]
Bastidas, Raiza [2 ,3 ,4 ]
Park, Sung-Kyu Robin [1 ]
Delahunty, Claire M. [1 ]
He, Lin [1 ]
Guenaga, Javier [2 ,3 ,4 ]
Wyatt, Richard T. [2 ,3 ,4 ]
Schief, William R. [2 ,3 ,4 ]
Ward, Andrew B. [3 ,4 ,5 ]
Yates, John R., III [1 ]
Burton, Dennis R. [2 ,3 ,4 ,6 ]
Paulson, James C. [1 ,2 ,3 ,4 ]
机构
[1] Scripps Res Inst, Dept Mol Med, La Jolla, CA 92037 USA
[2] Scripps Res Inst, Dept Immunol & Microbiol, La Jolla, CA 92037 USA
[3] Scripps Res Inst, Ctr HIV AIDS Vaccine Immunol & Immunogen Discover, La Jolla, CA 92037 USA
[4] Scripps Res Inst, IAVI Neutralizing Antibody Ctr, La Jolla, CA 92037 USA
[5] Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
[6] Ragon Inst MGH MIT & Harvard, Cambridge, MA USA
来源
NATURE COMMUNICATIONS | 2018年 / 9卷
关键词
BROADLY NEUTRALIZING ANTIBODIES; SITE-SPECIFIC ANALYSIS; DEPENDENT EPITOPE; GLYCOPROTEIN COMPLEX; ENV; PROTEIN; GLYCOSYLATION; SPECIFICITY; MODEL; IDENTIFICATION;
D O I
10.1038/s41467-018-06121-4
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
As the sole target of broadly neutralizing antibodies (bnAbs) to HIV, the envelope glycoprotein (Env) trimer is the focus of vaccination strategies designed to elicit protective bnAbs in humans. Because HIV Env is densely glycosylated with 75-90 N-glycans per trimer, most bnAbs use or accommodate them in their binding epitope, making the glycosylation of recombinant Env a key aspect of HIV vaccine design. Upon analysis of three HIV strains, we here find that site-specific glycosylation of Env from infectious virus closely matches Envs from corresponding recombinant membrane-bound trimers. However, viral Envs differ significantly from recombinant soluble, cleaved (SOSIP) Env trimers, strongly impacting antigenicity. These results provide a benchmark for virus Env glycosylation needed for the design of soluble Env trimers as part of an overall HIV vaccine strategy.
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页数:14
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共 68 条
  • [1] PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution
    Adams, Paul D.
    Afonine, Pavel V.
    Bunkoczi, Gabor
    Chen, Vincent B.
    Davis, Ian W.
    Echols, Nathaniel
    Headd, Jeffrey J.
    Hung, Li-Wei
    Kapral, Gary J.
    Grosse-Kunstleve, Ralf W.
    McCoy, Airlie J.
    Moriarty, Nigel W.
    Oeffner, Robert
    Read, Randy J.
    Richardson, David C.
    Richardson, Jane S.
    Terwilliger, Thomas C.
    Zwart, Peter H.
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 : 213 - 221
  • [2] Synthetic glycopeptides reveal the glycan specificity of HIV-neutralizing antibodies
    Amin, Mohammed N.
    McLellan, Jason S.
    Huang, Wei
    Orwenyo, Jared
    Burton, Dennis R.
    Koff, Wayne C.
    Kwong, Peter D.
    Wang, Lai-Xi
    [J]. NATURE CHEMICAL BIOLOGY, 2013, 9 (08) : 521 - 526
  • [3] Glycans Function as Anchors for Antibodies and Help Drive HIV Broadly Neutralizing Antibody Development
    Andrabi, Raiees
    Su, Ching-Yao
    Liang, Chi-Hui
    Shivatare, Sachin S.
    Briney, Bryan
    Voss, James E.
    Nawazi, Salar Khan
    Wu, Chung-Yi
    Wong, Chi-Huey
    Burton, Dennis R.
    [J]. IMMUNITY, 2017, 47 (03) : 524 - +
  • [4] Identification of Common Features in Prototype Broadly Neutralizing Antibodies to HIV Envelope V2 Apex to Facilitate Vaccine Design
    Andrabi, Raiees
    Voss, James E.
    Liang, Chi-Hui
    Briney, Bryan
    Mccoy, Laura E.
    Wu, Chung-Yi
    Wong, Chi-Huey
    Poignard, Pascal
    Burton, Dennis R.
    [J]. IMMUNITY, 2015, 43 (05) : 959 - 973
  • [5] The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
    Arnold, K
    Bordoli, L
    Kopp, J
    Schwede, T
    [J]. BIOINFORMATICS, 2006, 22 (02) : 195 - 201
  • [6] Barad BA, 2015, NAT METHODS, V12, P943, DOI [10.1038/NMETH.3541, 10.1038/nmeth.3541]
  • [7] Glycosylation profiling to evaluate glycoprotein immunogens against HIV-1
    Behrens, Anna-Janina
    Struwe, Weston B.
    Crispin, Max
    [J]. EXPERT REVIEW OF PROTEOMICS, 2017, 14 (10) : 881 - 890
  • [8] Molecular Architecture of the Cleavage-Dependent Mannose Patch on a Soluble HIV-1 Envelope Glycoprotein Trimer
    Behrens, Anna-Janina
    Harvey, David J.
    Milne, Emilia
    Cupo, Albert
    Kumar, Abhinav
    Zitzmann, Nicole
    Struwe, Weston B.
    Moore, John P.
    Crispin, Max
    [J]. JOURNAL OF VIROLOGY, 2017, 91 (02)
  • [9] Composition and Antigenic Effects of Individual Glycan Sites of a Trimeric HIV-1 Envelope Glycoprotein
    Behrens, Anna-Janina
    Vasiljevic, Snezana
    Pritchard, Laura K.
    Harvey, David J.
    Andev, Rajinder S.
    Krumm, Stefanie A.
    Struwe, Weston B.
    Cupo, Albert
    Kumar, Abhinav
    Zitzmann, Nicole
    Seabright, Gemma E.
    Kramer, Holger B.
    Spencer, Daniel I. R.
    Royle, Louise
    Lee, Jeong Hyun
    Klasse, Per J.
    Burton, Dennis R.
    Wilson, Ian A.
    Ward, Andrew B.
    Sanders, Rogier W.
    Moore, John P.
    Doores, Katie J.
    Crispin, Max
    [J]. CELL REPORTS, 2016, 14 (11): : 2695 - 2706
  • [10] EMHP: an accurate automated hole masking algorithm for single-particle cryo-EM image processing
    Berndsen, Zachary
    Bowman, Charles
    Jang, Haerin
    Ward, Andrew B.
    [J]. BIOINFORMATICS, 2017, 33 (23) : 3824 - 3826