Under-Representation of Racial Groups in Genomics Studies of Gastroenteropancreatic Neuroendocrine Neoplasms

被引:7
作者
Herring, Brendon R. [1 ]
Bonner, Andrew [1 ]
Guenter, Rachael E. [1 ]
Vickers, Selwyn [1 ]
Yates, Clayton [2 ]
Lee, Goo [3 ]
Dhall, Deepti [3 ]
Chen, Herbert [1 ]
Rose, J. Bart [1 ,4 ]
机构
[1] Univ Alabama Birmingham, Dept Surg, Sch Med, Birmingham, AL USA
[2] Tuskegee Univ, Dept Biol, Tuskegee, AL USA
[3] Univ Alabama Birmingham, Dept Pathol, Sch Med, Birmingham, AL USA
[4] Univ Alabama Birmingham, Sch Med, Boshell Diabet Bldg,Room 583,1808 7th Ave S, Birmingham, AL 35233 USA
来源
CANCER RESEARCH COMMUNICATIONS | 2022年 / 2卷 / 10期
关键词
EPIGENETIC REGULATION; TUMORS; DISPARITIES; CANCER; POPULATION; SURVIVAL; EXPRESSION; GUIDELINES; MANAGEMENT; MUTATIONS;
D O I
10.1158/2767-9764.CRC-22-0093
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Not all populations are poised to benefit from advancing genomics in gas-troenteropancreatic neuroendocrine neoplasms (GEP-NEN), as genomics have focused on White patients. This study aimed to evaluate racial popula-tions represented in genomic studies of GEP-NENs and to provide evidence of differential genomic findings between racial groups in GEP-NENs. Manuscripts analyzing DNA, RNA, or DNA methylation in GEP-NENs were queried using PUBMED and EMBASE. NIH race/ethnicity term fre-quency was then determined by Natural Language Processing, followed by manual evaluation of tumor types and subjects by racial group. IHC of institutional tissue micro-arrays and analysis of AACR GENIE data ana-lyzed was performed to determine mutational differences between Black and White pancreatic NEN (pNEN) patients. 313 manuscripts conducted the requisite genomic analyses, 16 of which included subject race data. Race data were included in 13/184 DNA, 4/107 RNA, and 1/54 DNA Methylation analyses. These studies included 89% White subjects (n = 2032), 5.8% Asian subjects (n = 132), 4.0% "Other" subjects (n = 93), and 1.2% Black subjects (n = 27). No Native American/Alaska Native, Native Hawaiian/Pacific Is-lander, or ethnically Hispanic/Latinx subjects were represented. There were significant differences in MENI mutations among Black and White pa-tients in immunohistochemical (13:40) and GENIE data (24:268 patients per group, respectively), with 9 additional genes differentially mutated in the GENIE dataset. Genomic sequencing data for GEP-NENs is almost racially homogenous. Differences in pNEN genomics may exist between racial groups, highlighting a need for diversity in future genomic analyses of GEP-NENs to understand the putative influence of interracial genomic variation on GEP-NEN prevention, diagnosis, and therapy.Significance: There is little diversity in genomic studies of GEP-NENs, which may exhibit clinically impactful variation in their tumor biology among racial groups. Improved diversity in such studies is imperative for understanding this variation and its potential impacts on disease prevention, diagnosis, therapeutic targeting, and clinical outcomes.
引用
收藏
页码:1162 / 1173
页数:12
相关论文
共 74 条
[1]   Racial Differences in Gene-Specific DNA Methylation Levels are Present at Birth [J].
Adkins, Ronald M. ;
Krushkal, Julia ;
Tylavsky, Frances A. ;
Thomas, Fridtjof .
BIRTH DEFECTS RESEARCH PART A-CLINICAL AND MOLECULAR TERATOLOGY, 2011, 91 (08) :728-736
[2]   Epigenetic basis of cancer health disparities: Looking beyond genetic differences [J].
Ahmad, Aamir ;
Azim, Shafquat ;
Zubair, Haseeb ;
Khan, Mohammad Aslam ;
Singh, Seema ;
Carter, James E. ;
Rocconi, Rodney P. ;
Singh, Ajay P. .
BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER, 2017, 1868 (01) :16-28
[3]   Enhancements to the ADMIXTURE algorithm for individual ancestry estimation [J].
Alexander, David H. ;
Lange, Kenneth .
BMC BIOINFORMATICS, 2011, 12
[4]   Fast model-based estimation of ancestry in unrelated individuals [J].
Alexander, David H. ;
Novembre, John ;
Lange, Kenneth .
GENOME RESEARCH, 2009, 19 (09) :1655-1664
[5]   AACR Project GENIE: Powering Precision Medicine through an International Consortium [J].
Andre, Fabrice ;
Arnedos, Monica ;
Baras, Alexander S. ;
Baselga, Jose ;
Bedard, Philippe L. ;
Berger, Michael F. ;
Bierkens, Mariska ;
Calvo, Fabien ;
Cerami, Ethan ;
Chakravarty, Debyani ;
Dang, Kristen K. ;
Davidson, Nancy E. ;
Del Vecchio, Fitz Catherine ;
Dogan, Semih ;
DuBois, Raymond N. ;
Ducar, Matthew D. ;
Futreal, P. Andrew ;
Gao Jianjiong ;
Garcia, Francisco ;
Gardos, Stu ;
Gocke, Christopher D. ;
Gross, Benjamin E. ;
Guinney, Justin ;
Heins, Zachary J. ;
Hintzen, Stephanie ;
Horlings, Hugo ;
Hudecek, Jan ;
Hyman, David M. ;
Kamel-Reid, Suzanne ;
Kandoth, Cyriac ;
Kinyua, Walter ;
Kumari, Priti ;
Kundra, Ritika ;
Ladanyi, Marc ;
Lefebvre, Celine ;
LeNoue-Newton, Michele L. ;
Lepisto, Eva M. ;
Levy, Mia A. ;
Lindeman, Neal, I ;
Lindsay, James ;
Liu, David ;
Lu Zhibin ;
MacConaill, Laura E. ;
Ian, Maurer ;
Maxwell, David S. ;
Meijer, Gerrit A. ;
Meric-Bernstam, Funda ;
Micheel, Christine M. ;
Miller, Clinton ;
Mills, Gordon .
CANCER DISCOVERY, 2017, 7 (08) :818-831
[6]   Whole-genome analysis of Nigerian patients with breast cancer reveals ethnic-driven somatic evolution and distinct genomic subtypes [J].
Ansari-Pour, Naser ;
Zheng, Yonglan ;
Yoshimatsu, Toshio F. ;
Sanni, Ayodele ;
Ajani, Mustapha ;
Reynier, Jean-Baptiste ;
Tapinos, Avraam ;
Pitt, Jason J. ;
Dentro, Stefan ;
Woodard, Anna ;
Rajagopal, Padma Sheila ;
Fitzgerald, Dominic ;
Gruber, Andreas J. ;
Odetunde, Abayomi ;
Popoola, Abiodun ;
Falusi, Adeyinka G. ;
Babalola, Chinedum Peace ;
Ogundiran, Temidayo ;
Ibrahim, Nasiru ;
Barretina, Jordi ;
Van Loo, Peter ;
Chen, Mengjie ;
White, Kevin P. ;
Ojengbede, Oladosu ;
Obafunwa, John ;
Huo, Dezheng ;
Wedge, David C. ;
Olopade, Olufunmilayo, I .
NATURE COMMUNICATIONS, 2021, 12 (01)
[7]   Comparative Genomics Reveals Distinct Immune-oncologic Pathways in African American Men with Prostate Cancer [J].
Awasthi, Shivanshu ;
Berglund, Anders ;
Abraham-Miranda, Julieta ;
Rounbehler, Robert J. ;
Kensler, Kevin ;
Serna, Amparo ;
Vidal, Adriana ;
You, Sungyong ;
Freeman, Michael R. ;
Davicioni, Elai ;
Liu, Yang ;
Karnes, R. Jeffrey ;
Klein, Eric A. ;
Den, Robert B. ;
Trock, Bruce J. ;
Campbell, Joshua D. ;
Einstein, David J. ;
Gupta, Raavi ;
Balk, Steven ;
Lal, Priti ;
Park, Jong Y. ;
Cleveland, John L. ;
Rebbeck, Timothy R. ;
Freedland, Stephen J. ;
Yamoah, Kosj .
CLINICAL CANCER RESEARCH, 2021, 27 (01) :320-329
[8]   Effect of treatment center volume on outcomes in gastroenteropancreatic neuroendocrine tumor patients [J].
Baeg, Kiwoon ;
Harris, Cynthia ;
Naparst, Monica S. ;
Ahn, Eugene ;
Thapi, Sahityasri ;
Martin, Jacob ;
Rustgi, Sheila ;
Mhango, Grace ;
Wisnivesky, Juan ;
Kim, Michelle Kang .
BMC CANCER, 2021, 21 (01)
[9]  
Barsouk Adam, 2019, Med Sci (Basel), V7, DOI 10.3390/medsci7030046
[10]   Racial disparities in operative management of localized, non-functional pancreatic neuroendocrine tumors in surgically fit patients [J].
Bingmer, Katherine E. ;
Hue, Jonathan J. ;
Sugumar, Kavin ;
Ammori, John B. ;
Rothermel, Luke D. ;
Winter, Jordan M. ;
Hardacre, Jeffrey M. ;
Ocuin, Lee M. .
HPB, 2022, 24 (02) :217-225