Modulation of Phase Separation by RNA: A Glimpse on N6-Methyladenosine Modification

被引:19
作者
Su, Yingfeng [1 ]
Maimaitiyiming, Yasen [1 ,2 ]
Wang, Lingfang [1 ,3 ]
Cheng, Xiaodong [3 ]
Hsu, Chih-Hung [1 ]
机构
[1] Zhejiang Univ, Sch Med, Dept Environm Med, Womens Hosp,Inst Genet, Hangzhou, Peoples R China
[2] Zhejiang Univ, Affiliated Hosp 1, Sch Med, Dept Publ Hlth,Dept Hematol, Hangzhou, Peoples R China
[3] Zhejiang Univ, Womens Hosp, Sch Med, Dept Obstet & Gynecol, Hangzhou, Peoples R China
基金
中国国家自然科学基金;
关键词
phase separation; N6-methyladenosine (m 6 A); biomolecular condensate; multivalence; RNA modification; RNA-RNA interaction; RNA-protein interaction; STRESS GRANULE FORMATION; MESSENGER-RNA; LIQUID DROPLETS; PROTEIN; M(6)A; METHYLATION; BINDING; TRANSLATION; TRANSITIONS; DOMAINS;
D O I
10.3389/fcell.2021.786454
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Phase separation is the driving force behind formation of various biomolecular condensates (BioMCs), which sub-compartmentalize certain cellular components in a membraneless manner to orchestrate numerous biological processes. Many BioMCs are composed of proteins and RNAs. While the features and functions of proteins are well studied, less attention was paid to the other essential component RNAs. Here, we describe how RNA contributes to the biogenesis, dissolution, and properties of BioMCs as a multivalence providing scaffold for proteins/RNA to undergo phase separation. Specifically, we focus on N-6-methyladenosine (m(6)A), the most widely distributed dynamic post-transcriptional modification, which would change the charge, conformation, and RNA-binding protein (RBP) anchoring of modified RNA. m(6)A RNA-modulated phase separation is a new perspective to illustrate m(6)A-mediated various biological processes. We summarize m(6)A main functions as "beacon" to recruit reader proteins and "structural switcher" to alter RNA-protein and RNA-RNA interactions to modulate phase separation and regulate the related biological processes.
引用
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页数:14
相关论文
共 139 条
[1]   Membrane-bound organelles versus membrane-less compartments and their control of anabolic pathways in Drosophila [J].
Aguilera-Gomez, Angelica ;
Rabouille, Catherine .
DEVELOPMENTAL BIOLOGY, 2017, 428 (02) :310-317
[2]   Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates [J].
Alberti, Simon ;
Gladfelter, Amy ;
Mittag, Tanja .
CELL, 2019, 176 (03) :419-434
[3]   The protective role of m1A during stress-induced granulation [J].
Alriquet, Marion ;
Calloni, Giulia ;
Martinez-Limon, Adrian ;
Delli Ponti, Riccardo ;
Hanspach, Gerd ;
Hengesbach, Martin ;
Tartaglia, Gian G. ;
Vabulas, R. Martin .
JOURNAL OF MOLECULAR CELL BIOLOGY, 2020, 12 (11) :870-880
[4]   Dynamic m6A methylation facilitates mRNA triaging to stress granules [J].
Anders, Maximilian ;
Chelysheva, Irina ;
Goebel, Ingrid ;
Trenkner, Timo ;
Zhou, Jun ;
Mao, Yuanhui ;
Verzini, Silvia ;
Qian, Shu-Bing ;
Ignatova, Zoya .
LIFE SCIENCE ALLIANCE, 2018, 1 (04)
[5]   RNA-Based Coacervates as a Model for Membraneless Organelles: Formation, Properties, and Interfacial Liposome Assembly [J].
Aumiller, William M., Jr. ;
Cakmak, Fatma Pir ;
Davis, Bradley W. ;
Keating, Christine D. .
LANGMUIR, 2016, 32 (39) :10042-10053
[6]  
Aumiller WM, 2016, NAT CHEM, V8, P129, DOI [10.1038/NCHEM.2414, 10.1038/nchem.2414]
[7]   Biomolecular condensates: organizers of cellular biochemistry [J].
Banani, Salman F. ;
Lee, Hyun O. ;
Hyman, Anthony A. ;
Rosen, Michael K. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2017, 18 (05) :285-298
[8]   Compositional Control of Phase-Separated Cellular Bodies [J].
Banani, Salman F. ;
Rice, Allyson M. ;
Peeples, William B. ;
Lin, Yuan ;
Jain, Saumya ;
Parker, Roy ;
Rosen, Michael K. .
CELL, 2016, 166 (03) :651-663
[9]   Reentrant Phase Transition Drives Dynamic Substructure Formation in Ribonucleoprotein Droplets [J].
Banerjee, Priya R. ;
Milin, Anthony N. ;
Moosa, Mahdi Muhammad ;
Onuchic, Paulo L. ;
Deniz, Ashok A. .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2017, 56 (38) :11354-11359
[10]   A structural perspective of RNA recognition by intrinsically disordered proteins [J].
Basu, Sushmita ;
Bahadur, Ranjit Prasad .
CELLULAR AND MOLECULAR LIFE SCIENCES, 2016, 73 (21) :4075-4084