Polarizable empirical force field for the primary and secondary alcohol series based on the classical drude model

被引:123
作者
Anisimov, Victor M.
Vorobyov, Igor V.
Roux, Benoit
MacKerell, Alexander D., Jr.
机构
[1] Univ Maryland, Sch Pharm, Dept Pharmaceut Sci, Baltimore, MD 21201 USA
[2] Univ Chicago, Gordon Ctr Integrat Sci, Inst Mol Pediat Sci, Chicago, IL 60637 USA
关键词
D O I
10.1021/ct700100a
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A polarizable empirical force field based on the classical Drude oscillator has been developed for the aliphatic alcohol series. The model is optimized with an emphasis on condensed-phase properties and is validated against a variety of experimental data. Transferability of the developed parameters is emphasized by the use of a single electrostatic model for the hydroxyl group throughout the alcohol series. Aliphatic moiety parameters were transferred from the polarizable alkane parameter set, with only the Lennard-Jones parameters on the carbon in methanol optimized. The developed model yields good agreement with pure solvent properties with the exception of the heats of vaporization of 1-propanol and 1-butanol, which are underestimated by approximately 6%; special LJ parameters for the oxygen in these two molecules that correct for this limitation are presented. Accurate treatment of the free energies of aqueous solvation required the use of atom-type specific O-alcohol-O-water LJ interaction terms, with specific terms used for the primary and secondary alcohols. With respect to gas-phase properties the polarizable model overestimates experimental dipole moments and quantum mechanical interaction energies with water by approximately 10 and 8%, respectively, a significant improvement over 44 and 46% overestimations of the corresponding properties in the CHARMM22 fixed-charge additive model. Comparison of structural properties of the polarizable and additive models for the pure solvents and in aqueous solution shows significant differences indicating atomic details of intermolecular interactions to be sensitive to the applied force field. The polarizable model predicts pure solvent and aqueous phase dipole moment distributions for ethanol centered at 2.4 and 2.7 D, respectively, a significant increase over the gas-phase value of 1.8 D, whereas in a solvent of lower polarity, benzene, a value of 1.9 is obtained. The ability of the polarizable model to yield changes in the dipole moment as well as the reproduction of a range of condensed-phase properties indicates its utility in the study of the properties of alcohols in a variety of condensed-phase environments as well as representing an important step in the development of a comprehensive force field for biological molecules.
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收藏
页码:1927 / 1946
页数:20
相关论文
共 97 条
[1]   A generating equation for mixing rules and two new mixing rules for interatomic potential energy parameters [J].
Al-Matar, AK ;
Rockstraw, DA .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2004, 25 (05) :660-668
[2]   The Cambridge Structural Database: a quarter of a million crystal structures and rising [J].
Allen, FH .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 2002, 58 (3 PART 1) :380-388
[3]  
Allen M. P., 2009, Computer Simulation of Liquids
[4]   Alcohols, ethers, carbohydrates, and related compounds. I. The MM4 force field for simple compounds [J].
Allinger, NL ;
Chen, KH ;
Lii, JH ;
Durkin, KA .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2003, 24 (12) :1447-1472
[5]   MOLECULAR-DYNAMICS SIMULATIONS AT CONSTANT PRESSURE AND-OR TEMPERATURE [J].
ANDERSEN, HC .
JOURNAL OF CHEMICAL PHYSICS, 1980, 72 (04) :2384-2393
[6]   Determination of electrostatic parameters for a polarizable force field based on the classical Drude oscillator [J].
Anisimov, VM ;
Lamoureux, G ;
Vorobyov, IV ;
Huang, N ;
Roux, B ;
MacKerell, AD .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2005, 1 (01) :153-168
[7]   A WELL-BEHAVED ELECTROSTATIC POTENTIAL BASED METHOD USING CHARGE RESTRAINTS FOR DERIVING ATOMIC CHARGES - THE RESP MODEL [J].
BAYLY, CI ;
CIEPLAK, P ;
CORNELL, WD ;
KOLLMAN, PA .
JOURNAL OF PHYSICAL CHEMISTRY, 1993, 97 (40) :10269-10280
[8]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[9]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[10]   The structure of liquid ethanol: A neutron diffraction and molecular dynamics study [J].
Benmore, CJ ;
Loh, YL .
JOURNAL OF CHEMICAL PHYSICS, 2000, 112 (13) :5877-5883