Next-generation sequencing and norovirus

被引：8

作者：

Cotten, Matthew ^{[1
]}

Koopmans, Marion ^{[1
]}

机构：

[1] Erasmus MC, Virosci Dept, Rotterdam, Netherlands

来源：

FUTURE VIROLOGY | 2016年 / 11卷 / 11期

基金：

英国医学研究理事会;

关键词：

next-generation sequencing; NoV tracking; GENOME; OUTBREAK;

D O I：

10.2217/fvl-2016-0099

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

引用

页码：719 / 722

页数：4

共 20 条

[1] Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases [J].

Arias, Armando ;

Watson, Simon J. ;

Asogun, Danny ;

Tobin, Ekaete Alice ;

Lu, Jia ;

Phan, My V. T. ;

Jah, Umaru ;

Wadoum, Raoul Emeric Guetiya ;

Meredith, Luke ;

Thorne, Lucy ;

Caddy, Sarah ;

Tarawalie, Alimamy ;

Langat, Pinky ;

Dudas, Gytis ;

Faria, Nuno R. ;

Dellicour, Simon ;

Kamara, Abdul ;

Kargbo, Brima ;

Kamara, Brima Osaio ;

Gevao, Sahr ;

Cooper, Daniel ;

Newport, Matthew ;

Horby, Peter ;

Dunning, Jake ;

Sahr, Foday ;

Brooks, Tim ;

Simpson, Andrew J. H. ;

Groppelli, Elisabetta ;

Liu, Guoying ;

Mulakken, Nisha ;

Rhodes, Kate ;

Akpablie, James ;

Yoti, Zabulon ;

Lamunu, Margaret ;

Vitto, Esther ;

Otim, Patrick ;

Owilli, Collins ;

Boateng, Isaac ;

Okoror, Lawrence ;

Omomoh, Emmanuel ;

Oyakhilome, Jennifer ;

Omiunu, Racheal ;

Yemisis, Ighodalo ;

Adomeh, Donatus ;

Ehikhiametalor, Solomon ;

Akhilomen, Patience ;

Aire, Chris ;

Kurth, Andreas ;

Cook, Nicola ;

Baumann, Jan .

VIRUS EVOLUTION, 2016, 2 (01)

[2] A Modified RNA-Seq Approach for Whole Genome Sequencing of RNA Viruses from Faecal and Blood Samples [J].

Batty, Elizabeth M. ;

Wong, T. H. Nicholas ;

Trebes, Amy ;

Argoud, Karene ;

Attar, Moustafa ;

Buck, David ;

Ip, Camilla L. C. ;

Golubchik, Tanya ;

Cule, Madeleine ;

Bowden, Rory ;

Manganis, Charis ;

Klenerman, Paul ;

Barnes, Eleanor ;

Walker, A. Sarah ;

Wyllie, David H. ;

Wilson, Daniel J. ;

Dingle, Kate E. ;

Peto, Tim E. A. ;

Crook, Derrick W. ;

Piazza, Paolo .

PLOS ONE, 2013, 8 (06)

[3]

Brown JR, J CLIN MICROBIOL, V54

[4] Contribution of Intra- and Interhost Dynamics to Norovirus Evolution [J].

Bull, Rowena A. ;

Eden, John-Sebastian ;

Luciani, Fabio ;

McElroy, Kerensa ;

Rawlinson, William D. ;

White, Peter A. .

JOURNAL OF VIROLOGY, 2012, 86 (06) :3219-3229

[5] Deep Sequencing of Norovirus Genomes Defines Evolutionary Patterns in an Urban Tropical Setting [J].

Cotten, Matthew ;

Petrova, Velislava ;

Phan, My V. T. ;

Rabaa, Maia A. ;

Watson, Simon J. ;

Ong, Swee Hoe ;

Kellam, Paul ;

Baker, Stephen .

JOURNAL OF VIROLOGY, 2014, 88 (19) :11056-11069

[6] Full Genome Virus Detection in Fecal Samples Using Sensitive Nucleic Acid Preparation, Deep Sequencing, and a Novel Iterative Sequence Classification Algorithm [J].

Cotten, Matthew ;

Munnink, Bas Oude ;

Canuti, Marta ;

Deijs, Martin ;

Watson, Simon J. ;

Kellam, Paul ;

van der Hoek, Lia .

PLOS ONE, 2014, 9 (04)

[7]

De Graaf M., 2016, EMERG INFEC IN PRESS

[8] Performance of VIDISCA-454 in Feces-Suspensions and Serum [J].

de Vries, Michel ;

Munnink, Bas B. Oude ;

Deijs, Martin ;

Canuti, Marta ;

Koekkoek, Sylvie M. ;

Molenkamp, Richard ;

Bakker, Margreet ;

Jurriaans, Suzanne ;

van Schaik, Barbera D. C. ;

Luyf, Angela C. ;

Olabarriaga, Silvia D. ;

van Kampen, Antoine H. C. ;

van der Hoek, Lia .

VIRUSES-BASEL, 2012, 4 (08) :1328-1334

[9] Resurgence of Ebola Virus Disease in Guinea Linked to a Survivor With Virus Persistence in Seminal Fluid for More Than 500 Days [J].

Diallo, Boubacar ;

Sissoko, Daouda ;

Loman, Nicholas J. ;

Bah, Hadja Aissatou ;

Bah, Hawa ;

Worrell, Mary Claire ;

Conde, Lya Saidou ;

Sacko, Ramata ;

Mesfin, Samuel ;

Loua, Angelo ;

Kalonda, Jacques Katomba ;

Erondu, Ngozi A. ;

Dahl, Benjamin A. ;

Handrick, Susann ;

Goodfellow, Ian ;

Meredith, Luke W. ;

Cotten, Matthew ;

Jah, Umaru ;

Wadoum, Raoul Emeric Guetiya ;

Rollin, Pierre ;

Magassouba, N'Faly ;

Malvy, Denis ;

Anglaret, Xavier ;

Carroll, Miles W. ;

Aylward, Raymond Bruce ;

Djingarey, Mamoudou Harouna ;

Diarra, Abdoulaye ;

Formenty, Pierre ;

Keita, Sakoba ;

Guenther, Stephan ;

Rambaut, Andrew ;

Duraffour, Sophie .

CLINICAL INFECTIOUS DISEASES, 2016, 63 (10) :1353-1356

[10] Replication of human noroviruses in stem cell-derived human enteroids [J].

Ettayebi, Khalil ;

Crawford, Sue E. ;

Murakami, Kosuke ;

Broughman, James R. ;

Karandikar, Umesh ;

Tenge, Victoria R. ;

Neill, Frederick H. ;

Blutt, Sarah E. ;

Zeng, Xi-Lei ;

Qu, Lin ;

Kou, Baijun ;

Opekun, Antone R. ;

Burrin, Douglas ;

Graham, David Y. ;

Ramani, Sasirekha ;

Atmar, Robert L. ;

Estes, Mary K. .

SCIENCE, 2016, 353 (6306) :1387-1393

← 1 2 →