A portable expression resource for engineering cross-species genetic circuits and pathways

被引:108
作者
Kushwaha, Manish [1 ]
Salis, Howard M. [1 ,2 ]
机构
[1] Penn State Univ, Dept Biol Engn, University Pk, PA 16802 USA
[2] Penn State Univ, Dept Chem Engn, University Pk, PA 16802 USA
基金
美国国家科学基金会;
关键词
BACTERIOPHAGE-T7; RNA-POLYMERASE; LACTOBACILLUS-PLANTARUM; SYNTHETIC CIRCUITS; BACILLUS-SUBTILIS; AUTOMATED DESIGN; MESSENGER-RNA; SPECIFICITY; PROMOTERS; OPTIMIZATION; SEQUENCE;
D O I
10.1038/ncomms8832
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Genetic circuits and metabolic pathways can be reengineered to allow organisms to process signals and manufacture useful chemicals. However, their functions currently rely on organism-specific regulatory parts, fragmenting synthetic biology and metabolic engineering into host-specific domains. To unify efforts, here we have engineered a cross-species expression resource that enables circuits and pathways to reuse the same genetic parts, while functioning similarly across diverse organisms. Our engineered system combines mixed feedback control loops and cross-species translation signals to autonomously self-regulate expression of an orthogonal polymerase without host-specific promoters, achieving nontoxic and tuneable gene expression in diverse Gram-positive and Gram-negative bacteria. Combining 50 characterized system variants with mechanistic modelling, we show how the cross-species expression resource's dynamics, capacity and toxicity are controlled by the control loops' architecture and feedback strengths. We also demonstrate one application of the resource by reusing the same genetic parts to express a biosynthesis pathway in both model and non-model hosts.
引用
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页数:11
相关论文
共 70 条
[1]  
[Anonymous], ACS SYNTH BIOL
[2]   RNA polymerases from Bacillus subtilis and Escherichia coli differ in recognition of regulatory signals in vitro [J].
Artsimovitch, I ;
Svetlov, V ;
Anthony, L ;
Burgess, RR ;
Landick, R .
JOURNAL OF BACTERIOLOGY, 2000, 182 (21) :6027-6035
[3]   Multivariate modular metabolic engineering for pathway and strain optimization [J].
Biggs, Bradley Walters ;
De Paepe, Brecht ;
Santos, Christine Nicole S. ;
De Mey, Marjan ;
Ajikumar, Parayil Kumaran .
CURRENT OPINION IN BIOTECHNOLOGY, 2014, 29 :156-162
[4]   Tuning Gene Expression in Yarrowia lipolytica by a Hybrid Promoter Approach [J].
Blazeck, John ;
Liu, Leqian ;
Redden, Heidi ;
Alper, Hal .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2011, 77 (22) :7905-7914
[5]  
Bron S., 1990, Molecular biological methods for Bacillus, P75
[6]  
Brophy JAN, 2014, NAT METHODS, V11, P508, DOI [10.1038/NMETH.2926, 10.1038/nmeth.2926]
[7]   Rational Design of a Plasmid Origin That Replicates Efficiently in Both Gram-Positive and Gram-Negative Bacteria [J].
Bryksin, Anton V. ;
Matsumura, Ichiro .
PLOS ONE, 2010, 5 (10)
[8]   Contextualizing context for synthetic biology - identifying causes of failure of synthetic biological systems [J].
Cardinale, Stefano ;
Arkin, Adam Paul .
BIOTECHNOLOGY JOURNAL, 2012, 7 (07) :856-866
[9]  
Chen YJ, 2013, NAT METHODS, V10, P659, DOI [10.1038/NMETH.2515, 10.1038/nmeth.2515]
[10]   Design of synthetic yeast promoters via tuning of nucleosome architecture [J].
Curran, Kathleen A. ;
Crook, Nathan C. ;
Karim, Ashty S. ;
Gupta, Akash ;
Wagman, Allison M. ;
Alper, Hal S. .
NATURE COMMUNICATIONS, 2014, 5