Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein

被引:243
作者
Hashimoto, Takuma [1 ]
Horikawa, Daiki D. [1 ,2 ,3 ]
Saito, Yuki [1 ]
Kuwahara, Hirokazu [1 ,4 ]
Kozuka-Hata, Hiroko [5 ]
Shin-, Tadasu, I [6 ]
Minakuchi, Yohei [7 ]
Ohishi, Kazuko [6 ]
Motoyama, Ayuko [7 ]
Aizu, Tomoyuki [7 ]
Enomoto, Atsushi [8 ]
Kondo, Koyuki [1 ]
Tanaka, Sae [1 ]
Hara, Yuichiro [9 ]
Koshikawa, Shigeyuki [10 ,11 ,12 ]
Sagara, Hiroshi [5 ]
Miura, Toru [10 ]
Yokobori, Shin-ichi [13 ]
Miyagawa, Kiyoshi [8 ]
Suzuki, Yutaka [14 ]
Kubo, Takeo [1 ]
Oyama, Masaaki [5 ]
Kohara, Yuji [6 ]
Fujiyama, Asao [7 ,15 ]
Arakawa, Kazuharu [3 ]
Katayama, Toshiaki [16 ]
Toyoda, Atsushi [7 ]
Kunieda, Takekazu [1 ]
机构
[1] Univ Tokyo, Dept Biol Sci, Grad Sch Sci, Bunkyo Ku, 7-3-1 Hongo, Tokyo 1130033, Japan
[2] Hokkaido Univ, Grad Sch Environm Earth Sci, Kita Ku, Kita 8,Nishi 5, Sapporo, Hokkaido 0600810, Japan
[3] Keio Univ, Inst Adv Biosci, Mizukami 246-2, Tsuruoka, Yamagata 9970052, Japan
[4] Tokyo Inst Technol, Dept Biol Sci, Grad Sch Biosci Biotechnol, Meguro Ku, 2-12-1 Ookayama, Tokyo 1528550, Japan
[5] Univ Tokyo, Med Prote Lab, Inst Med Sci, Minato Ku, 4-6-1 Shirokanedai, Tokyo 1088639, Japan
[6] Natl Inst Genet, Genome Biol Lab, 1111 Yata, Mishima, Shizuoka 4118540, Japan
[7] Natl Inst Genet, Comparat Genom Lab, 1111 Yata, Mishima, Shizuoka 4118540, Japan
[8] Univ Tokyo, Lab Mol Radiol, Grad Sch Med, Bunkyo Ku, 7-3-1 Hongo, Tokyo 1130033, Japan
[9] RIKEN Ctr Life Sci Technol, Phyloinformat Unit, Chuo Ku, 2-2-3 Minatojima Minami, Kobe, Hyogo 6500047, Japan
[10] Hokkaido Univ, Lab Ecol Genet, Grad Sch Environm Sci, Kita Ku, Kita 10,Nishi 5, Sapporo, Hokkaido 0600810, Japan
[11] Kyoto Univ, Hakubi Ctr Adv Res, Sakyo Ku, Kitashirakawa Oiwake Cho, Kyoto 6068502, Japan
[12] Kyoto Univ, Grad Sch Sci, Sakyo Ku, Kitashirakawa Oiwake Cho, Kyoto 6068502, Japan
[13] Tokyo Univ Pharm & Life Sci, Lab Extremophiles, Dept Appl Life Sci, Sch Life Sci, 1432-1 Horinouchi,Hachioji, Tokyo 1920392, Japan
[14] Univ Tokyo, Dept Computat Biol & Med Sci, Grad Sch Frontier Sci, 5-1-5 Kashiwanoha, Kashiwa, Chiba 2778562, Japan
[15] SOKENDAI Grad Univ Adv Studies, Dept Genet, 1111 Yata, Mishima, Shizuoka 4118540, Japan
[16] Database Ctr Life Sci, 178-4-4 Wakashiba, Kashiwa, Chiba 2770871, Japan
基金
日本学术振兴会;
关键词
STRAND BREAK REPAIR; TRANSFER-RNA GENES; OXIDATIVE STRESS; RAMAZZOTTIUS-VARIEORNATUS; RICHTERSIUS-CORONIFER; RADIATION TOLERANCE; IONIZING-RADIATION; EPITHELIAL-CELLS; MAMMALIAN-CELLS; COMPLEX;
D O I
10.1038/ncomms12808
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Tardigrades, also known as water bears, are small aquatic animals. Some tardigrade species tolerate almost complete dehydration and exhibit extraordinary tolerance to various physical extremes in the dehydrated state. Here we determine a high-quality genome sequence of Ramazzottius varieornatus, one of the most stress-tolerant tardigrade species. Precise gene repertoire analyses reveal the presence of a small proportion (1.2% or less) of putative foreign genes, loss of gene pathways that promote stress damage, expansion of gene families related to ameliorating damage, and evolution and high expression of novel tardigrade-unique proteins. Minor changes in the gene expression profiles during dehydration and rehydration suggest constitutive expression of tolerance-related genes. Using human cultured cells, we demonstrate that a tardigrade-unique DNA-associating protein suppresses X-ray-induced DNA damage by similar to 40% and improves radiotolerance. These findings indicate the relevance of tardigrade-unique proteins to tolerability and tardigrades could be a bountiful source of new protection genes and mechanisms.
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页数:14
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