Efficient estimation of indirect effects in case-control studies using a unified likelihood framework

被引:3
作者
Satten, Glen A. [1 ]
Curtis, Sarah W. [2 ]
Solis-Lemus, Claudia [3 ]
Leslie, Elizabeth J. [2 ]
Epstein, Michael P. [2 ]
机构
[1] Emory Univ, Dept Gynecol & Obstet, Atlanta, GA 30322 USA
[2] Emory Univ, Dept Human Genet, Atlanta, GA 30322 USA
[3] Univ Wisconsin, Dept Plant Pathol, Wisconsin Inst Discovery, Madison, WI 53706 USA
关键词
case-control study; genetic epidemiology; mediation analysis; MEDIATION ANALYSIS; LUNG-CANCER; FAMILIAL RISK; SMOKING; SUSCEPTIBILITY; ASSOCIATIONS; INFERENCE; GENOTYPE; MODELS; NULL;
D O I
10.1002/sim.9390
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Mediation models are a set of statistical techniques that investigate the mechanisms that produce an observed relationship between an exposure variable and an outcome variable in order to deduce the extent to which the relationship is influenced by intermediate mediator variables. For a case-control study, the most common mediation analysis strategy employs a counterfactual framework that permits estimation of indirect and direct effects on the odds ratio scale for dichotomous outcomes, assuming either binary or continuous mediators. While this framework has become an important tool for mediation analysis, we demonstrate that we can embed this approach in a unified likelihood framework for mediation analysis in case-control studies that leverages more features of the data (in particular, the relationship between exposure and mediator) to improve efficiency of indirect effect estimates. One important feature of our likelihood approach is that it naturally incorporates cases within the exposure-mediator model to improve efficiency. Our approach does not require knowledge of disease prevalence and can model confounders and exposure-mediator interactions, and is straightforward to implement in standard statistical software. We illustrate our approach using both simulated data and real data from a case-control genetic study of lung cancer.
引用
收藏
页码:2879 / 2893
页数:15
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共 50 条
[1]   Testing for the indirect effect under the null for genome-wide mediation analyses [J].
Barfield, Richard ;
Shen, Jincheng ;
Just, Allan C. ;
Vokonas, Pantel S. ;
Schwartz, Joel ;
Baccarelli, Andrea A. ;
VanderWeele, Tyler J. ;
Lin, Xihong .
GENETIC EPIDEMIOLOGY, 2017, 41 (08) :824-833
[2]   THE MODERATOR MEDIATOR VARIABLE DISTINCTION IN SOCIAL PSYCHOLOGICAL-RESEARCH - CONCEPTUAL, STRATEGIC, AND STATISTICAL CONSIDERATIONS [J].
BARON, RM ;
KENNY, DA .
JOURNAL OF PERSONALITY AND SOCIAL PSYCHOLOGY, 1986, 51 (06) :1173-1182
[3]   A Decade of GWAS Results in Lung Cancer [J].
Bosse, Yohan ;
Amos, Christopher I. .
CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION, 2018, 27 (04) :363-379
[4]   PROSPECTIVE ANALYSIS OF LOGISTIC CASE-CONTROL STUDIES [J].
CARROLL, RJ ;
WANG, SJ ;
WANG, CY .
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 1995, 90 (429) :157-169
[5]   Exploiting Hardy-Weinberg equilibrium for efficient screening of single SNP associations from case-control studies [J].
Chen, Jinbo ;
Chatterjee, Nilanjan .
HUMAN HEREDITY, 2007, 63 (3-4) :196-204
[6]   Inference on haplotype effects in case-control studies using unphased genotype data [J].
Epstein, MP ;
Satten, GA .
AMERICAN JOURNAL OF HUMAN GENETICS, 2003, 73 (06) :1316-1329
[7]   A common genetic variant in the 15q24 nicotinic acetylcholine receptor gene cluster (CHRNA5-CHRNA3-CHRNB4) is associated with a reduced ability of women to quit smoking in pregnancy [J].
Freathy, Rachel M. ;
Ring, Susan M. ;
Shields, Beverley ;
Galobardes, Bruna ;
Knight, Beatrice ;
Weedon, Michael N. ;
Smith, George Davey ;
Frayling, Timothy M. ;
Hattersley, Andrew T. .
HUMAN MOLECULAR GENETICS, 2009, 18 (15) :2922-2927
[8]   Statistical mediation analysis with a multicategorical independent variable [J].
Hayes, Andrew F. ;
Preacher, Kristopher J. .
BRITISH JOURNAL OF MATHEMATICAL & STATISTICAL PSYCHOLOGY, 2014, 67 (03) :451-470
[9]   GENOME-WIDE ANALYSES OF SPARSE MEDIATION EFFECTS UNDER COMPOSITE NULL HYPOTHESES [J].
Huang, Yen-Tsung .
ANNALS OF APPLIED STATISTICS, 2019, 13 (01) :60-84
[10]  
Huber P.J., 1967, P 5 BERK S MATH STAT, VI, P221