The Battle Within: Interactions of Bacteriophages and Bacteria in the Gastrointestinal Tract

被引:87
作者
De Sordi, Luisa [1 ,2 ]
Lourenco, Marta [1 ,3 ]
Debarbieux, Laurent [1 ]
机构
[1] Inst Pasteur, Dept Microbiol, F-75015 Paris, France
[2] Sorbonne Univ, INSERM, UMRS938, Ctr Rech St Antoine, Paris, France
[3] Sorbonne Univ, Coll Doctoral, F-75005 Paris, France
关键词
ESCHERICHIA-COLI; GUT MICROBIOTA; PROPHAGE INDUCTION; ECOLOGY; PHAGES; COEVOLUTION; RESISTANCE; VIROME; EXPRESSION; DIVERSITY;
D O I
10.1016/j.chom.2019.01.018
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The intestinal microbiota is intimately linked to human health. Decoding the mechanisms underlying its stability in healthy subjects should uncover causes of microbiota-associated diseases and pave the way for treatment. Bacteria and bacteriophages (phages) are the most abundant biological entities in the gastro-intestinal tract, where their coexistence is dynamic and affixed. Phages drive and maintain bacterial diversity by perpetuating the coevolutionary interactions with their microbial prey. This review brings together recent in silico, in vitro, and in vivo work dissecting the complexity of phage-bacteria interactions in the intestinal microbiota, including coevolution perspectives. We define the types of dynamics encountered in the gastro-intestinal tract and the parameters that affect their outcome. The impact of intestinal physiology on phage-bacterial coevolution is analyzed in the light of its potential contribution to the relationship between the microbiota and human health.
引用
收藏
页码:210 / 218
页数:9
相关论文
共 89 条
[1]  
[Anonymous], 2018, VIRUSES
[2]   Prophage induction and expression of prophage-encoded virulence factors in group A Streptococcus serotype M3 strain MGAS315 [J].
Banks, DJ ;
Lei, BF ;
Musser, JM .
INFECTION AND IMMUNITY, 2003, 71 (12) :7079-7086
[3]   PROPHAGE INDUCTION AND INACTIVATION BY UV LIGHT [J].
BARNHART, BJ ;
COX, SH ;
JETT, JH .
JOURNAL OF VIROLOGY, 1976, 18 (03) :950-955
[4]   Bacteriophage adhering to mucus provide a non-host-derived immunity [J].
Barr, Jeremy J. ;
Auro, Rita ;
Furlan, Mike ;
Whiteson, Katrine L. ;
Erb, Marcella L. ;
Pogliano, Joe ;
Stotland, Aleksandr ;
Wolkowicz, Roland ;
Cutting, Andrew S. ;
Doran, Kelly S. ;
Salamon, Peter ;
Youle, Merry ;
Rohwer, Forest .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (26) :10771-10776
[5]   Role of the Microbiota in Immunity and Inflammation [J].
Belkaid, Yasmine ;
Hand, Timothy W. .
CELL, 2014, 157 (01) :121-141
[6]   A virulence-associated filamentous bacteriophage of Neisseria meningitidis increases host-cell colonisation [J].
Bille, Emmanuelle ;
Meyer, Julie ;
Jamet, Anne ;
Euphrasie, Daniel ;
Barnier, Jean-Philippe ;
Brissac, Terry ;
Larsen, Anna ;
Pelissier, Philippe ;
Nassif, Xavier .
PLOS PATHOGENS, 2017, 13 (07)
[7]   Pervasive domestication of defective prophages by bacteria [J].
Bobay, Louis-Marie ;
Touchon, Marie ;
Rocha, Eduardo P. C. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (33) :12127-12132
[8]   iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure [J].
Bolduc, Benjamin ;
Youens-Clark, Ken ;
Roux, Simon ;
Hurwitz, Bonnie L. ;
Sullivan, Matthew B. .
ISME JOURNAL, 2017, 11 (01) :7-14
[9]   Phage puppet masters of the marine microbial realm [J].
Breitbart, Mya ;
Bonnain, Chelsea ;
Malki, Kema ;
Sawaya, Natalie A. .
NATURE MICROBIOLOGY, 2018, 3 (07) :754-766
[10]   Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium [J].
Brugiroux, Sandrine ;
Beutler, Markus ;
Pfann, Carina ;
Garzetti, Debora ;
Ruscheweyh, Hans-Joachim ;
Ring, Diana ;
Diehl, Manuel ;
Herp, Simone ;
Loetscher, Yvonne ;
Hussain, Saib ;
Bunk, Boyke ;
Pukall, Ruediger ;
Huson, Daniel H. ;
Muench, Philipp C. ;
McHardy, Alice C. ;
McCoy, Kathy D. ;
Macpherson, Andrew J. ;
Loy, Alexander ;
Clavel, Thomas ;
Berry, David ;
Stecher, Baerbel .
NATURE MICROBIOLOGY, 2017, 2 (02)