Plasma Components Affect Accuracy of Circulating Cancer-Related MicroRNA Quantitation

被引:143
作者
Kim, Dong-Ja [1 ]
Linnstaedt, Sarah [8 ]
Palma, Jaime [1 ]
Park, Joon Cheol [4 ]
Ntrivalas, Evangelos [3 ,5 ]
Kwak-Kim, Joanne Y. H. [4 ,5 ]
Gilman-Sachs, Alice [3 ,5 ]
Beaman, Kenneth [3 ,5 ]
Hastings, Michelle L. [6 ]
Martin, Jeffrey N. [2 ]
Duelli, Dominik M. [1 ,7 ]
机构
[1] Rosalind Franklin Univ Med & Sci, Chicago Med Sch, Dept Pathol, N Chicago, IL 60064 USA
[2] Univ Calif San Francisco, Dept Epidemiol & Biostat, San Francisco, CA 94143 USA
[3] Rosalind Franklin Univ Med & Sci, Clin Immunol Lab, N Chicago, IL 60064 USA
[4] Rosalind Franklin Univ Med & Sci, Dept Obstet & Gynecol, N Chicago, IL 60064 USA
[5] Rosalind Franklin Univ Med & Sci, Dept Microbiol & Immunol, N Chicago, IL 60064 USA
[6] Rosalind Franklin Univ Med & Sci, Dept Cell Biol & Anat, N Chicago, IL 60064 USA
[7] Rosalind Franklin Univ Med & Sci, Dept Cellular & Mol Pharmacol, N Chicago, IL 60064 USA
[8] Duke Univ, Med Ctr, Dept Mol Genet & Microbiol, Durham, NC USA
关键词
EPSTEIN-BARR-VIRUS; TIME RT-PCR; MESSENGER-RNA; DIAGNOSTIC BIOMARKERS; HEPARINASE TREATMENT; DNA AMPLIFICATION; BREAST-CANCER; POLYMERASE; BLOOD; SAMPLES;
D O I
10.1016/j.jmoldx.2011.09.002
中图分类号
R36 [病理学];
学科分类号
100104 ;
摘要
Circulating microRNAs (miRNAs) have emerged as candidate biomarkers of various diseases and conditions including malignancy and pregnancy. This approach requires sensitive and accurate quantitation of miRNA concentrations in body fluids. Herein we report that enzyme-based miRNA quantitation, which is currently the mainstream approach for identifying differences in miRNA abundance among samples, is skewed by endogenous serum factors that co-purify with miRNAs and anticoagulant agents used during collection. Of importance, different miRNAs were affected to varying extent among patient samples. By developing measures to overcome these interfering activities, we increased the accuracy, and improved the sensitivity of miRNA detection up to 30-fold. Overall, the present study outlines key factors that prevent accurate miRNA quantitation in body fluids and provides approaches that enable faithful quantitation of miRNA abundance in body fluids. (J Mol Diagn 2012, 14:71-80; DOI: 10.1016/j.jmoldx.2011.09.002)
引用
收藏
页码:71 / 80
页数:10
相关论文
共 60 条
  • [1] Abu Al-Soud W, 2000, J CLIN MICROBIOL, V38, P345
  • [2] Purification and characterization of PCR-inhibitory components in blood cells
    Abu al-Soud, W
    Rådström, P
    [J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2001, 39 (02) : 485 - 493
  • [3] Abu Al-Soud W, 1998, APPL ENVIRON MICROB, V64, P3748
  • [4] AKANE A, 1994, J FORENSIC SCI, V39, P362
  • [5] Almeida MI, 2011, MUTAT RES
  • [6] Improved microRNA quantification in total RNA from clinical samples
    Andreasen, Ditte
    Fog, Jacob U.
    Biggs, William
    Salomon, Jesper
    Dahslveen, Ina K.
    Baker, Adam
    Mouritzen, Peter
    [J]. METHODS, 2010, 50 (04) : S6 - S9
  • [7] miR-15a and miR-16-1 in cancer: discovery, function and future perspectives
    Aqeilan, R. I.
    Calin, G. A.
    Croce, C. M.
    [J]. CELL DEATH AND DIFFERENTIATION, 2010, 17 (02) : 215 - 220
  • [8] Argonaute2 complexes carry a population of circulating microRNAs independent of vesicles in human plasma
    Arroyo, Jason D.
    Chevillet, John R.
    Kroh, Evan M.
    Ruf, Ingrid K.
    Pritchard, Colin C.
    Gibson, Donald F.
    Mitchell, Patrick S.
    Bennett, Christopher F.
    Pogosova-Agadjanyan, Era L.
    Stirewalt, Derek L.
    Tait, Jonathan F.
    Tewari, Muneesh
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (12) : 5003 - 5008
  • [9] Establishment and characterization of a primary effusion (body cavity-based) lymphoma cell line (BC-3) harboring Kaposi's sarcoma-associated herpesvirus (KSHV/HHV-8) in the absence of Epstein-Barr virus
    Arvanitakis, L
    Mesri, EA
    Nador, RG
    Said, JW
    Asch, AS
    Knowles, DM
    Cesarman, E
    [J]. BLOOD, 1996, 88 (07) : 2648 - 2654
  • [10] THE FIDELITY OF TAQ POLYMERASE CATALYZING PCR IS IMPROVED BY AN N-TERMINAL DELETION
    BARNES, WM
    [J]. GENE, 1992, 112 (01) : 29 - 35