Genetic Diversity for Accelerating Microbial Adaptive Laboratory Evolution

被引:19
|
作者
Zheng, Yangyang [1 ,2 ,3 ]
Hong, Kunqiang [1 ,2 ,3 ]
Wang, Baowei [1 ,2 ,3 ,4 ]
Liu, Dingyu [4 ]
Chen, Tao [1 ,2 ,3 ]
Wang, Zhiwen [1 ,2 ,3 ]
机构
[1] Tianjin Univ, Dept Biochem Engn, Sch Chem Engn & Technol, Tianjin 300072, Peoples R China
[2] Tianjin Univ, Collaborat Innovat Ctr Chem Sci & Engn Tianjin, Minist Educ, Key Lab Syst Bioengn, Tianjin 300072, Peoples R China
[3] Tianjin Univ, Collaborat Innovat Ctr Chem Sci & Engn Tianjin, SynBio Res Platform, Tianjin 300072, Peoples R China
[4] Chinese Acad Sci, Tianjin Inst Ind Biotechnol, Key Lab Syst Microbial Biotechnol, Tianjin 300308, Peoples R China
来源
ACS SYNTHETIC BIOLOGY | 2021年 / 10卷 / 07期
基金
中国国家自然科学基金;
关键词
adaptive laboratory evolution; mutant library; genetic diversity; genome editing; IMPROVED ETHANOL TOLERANCE; ESCHERICHIA-COLI; TRANSCRIPTION MACHINERY; DIRECTED EVOLUTION; MUTAGENESIS; STRAIN; RESTRICTION; BIOLOGY; IMPROVEMENT; MECHANISMS;
D O I
10.1021/acssynbio.0c00589
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Adaptive laboratory evolution (ALE) is a widely used and highly effective tool for improving microbial phenotypes and investigating the evolutionary roots of biological phenomena. Serving as the raw materials of evolution, mutations have been extensively utilized to increase the chances of engineering molecules or microbes with tailor-made functions. The generation of genetic diversity is therefore a core technology for accelerating ALE, and a high-quality mutant library is crucial to its success. Because of its importance, technologies for generating genetic diversity have undergone rapid development in recent years. Here, we review the existing techniques for the construction of mutant libraries, briefly introduce their mechanisms and applications, discuss ongoing and emerging efforts to apply engineering technologies in the construction of mutant libraries, and suggest future perspectives for library construction.
引用
收藏
页码:1574 / 1586
页数:13
相关论文
共 50 条
  • [31] Rapid Evolution of Simple Microbial Communities in the Laboratory
    Kinnersley, Margie
    Wenger, Jared W.
    Sherlock, Gavin
    Rosenzweig, Frank R.
    EVOLUTIONARY BIOLOGY: CONCEPTS, BIODIVERSITY, MACROEVOLUTION AND GENOME EVOLUTION, 2011, : 107 - +
  • [32] Laboratory Evolution of Microbial Interactions in Bacterial Biofilms
    Martin, Marivic
    Hoelscher, Theresa
    Dragos, Anna
    Cooper, Vaughn S.
    Kovacs, Akos T.
    JOURNAL OF BACTERIOLOGY, 2016, 198 (19) : 2564 - 2571
  • [33] Fit and diversity: Explaining adaptive evolution
    Walsh, DM
    PHILOSOPHY OF SCIENCE, 2003, 70 (02) : 280 - 301
  • [34] Defining the landscape of adaptive genetic diversity
    Eckert, Andrew J.
    Dyer, Rodney J.
    MOLECULAR ECOLOGY, 2012, 21 (12) : 2836 - 2838
  • [35] Evolution of microbial diversity during prolonged starvation
    Finkel, SE
    Kolter, R
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (07) : 4023 - 4027
  • [36] The diversity and evolution of microbial dissimilatory phosphite oxidation
    Ewens, Sophia D.
    Gomberg, Alexa F. S.
    Barnum, Tyler P.
    Borton, Mikayla A.
    Carlson, Hans K.
    Wrighton, Kelly C.
    Coates, John D.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2021, 118 (11)
  • [37] Evolution of genetic diversity and human diseases
    V. A. Stepanov
    Russian Journal of Genetics, 2016, 52 : 746 - 756
  • [38] Genome evolution and genetic diversity of grapes
    Volynkin, V.
    Polulyakh, A.
    Levchenko, S.
    Vasylyk, I.
    XXX INTERNATIONAL HORTICULTURAL CONGRESS, IHC 2018-V INTERNATIONAL SYMPOSIUM ON PLANT GENETIC RESOURCES AND INTERNATIONAL SYMPOSIUM ON APPLIED FUNCTIONAL MOLECULAR BIOLOGY, 2020, 1297 : 407 - 412
  • [39] Genetic Diversity: Driving cancer evolution
    Fitzgerald, Devon M.
    Rosenberg, Susan M.
    ELIFE, 2017, 6
  • [40] Evolution of genetic diversity and human diseases
    Stepanov, V. A.
    RUSSIAN JOURNAL OF GENETICS, 2016, 52 (07) : 746 - 756