The Impact of Microbial Metabolism on Marine Dissolved Organic Matter

被引:233
作者
Kujawinski, Elizabeth B. [1 ]
机构
[1] Woods Hole Oceanog Inst, Dept Marine Chem & Geochem, Woods Hole, MA 02543 USA
来源
ANNUAL REVIEW OF MARINE SCIENCE, VOL 3 | 2011年 / 3卷
基金
美国国家科学基金会;
关键词
dissolved organic matter; microorganisms; metabolomics; ABC transporters; HIGH-MOLECULAR-WEIGHT; FREE AMINO-ACIDS; COMMUNITY STRUCTURE; BACTERIAL GROUPS; GENOME SEQUENCE; REVEALS ADAPTATIONS; POPULATION-DYNAMICS; MASS-SPECTROMETRY; SAR11; BACTERIA; NORTH-ATLANTIC;
D O I
10.1146/annurev-marine-120308-081003
中图分类号
P3 [地球物理学]; P59 [地球化学];
学科分类号
0708 ; 070902 ;
摘要
Microbes mediate global biogeochemical cycles through their metabolism, and all metabolic processes begin with the interaction between the microbial cell wall or membrane and the external environment. For all heterotrophs and many autotrophs, critical growth substrates and factors are present within the dilute and heterogeneous mixture of compounds that constitutes dissolved organic matter (DOM). In short, the microbe molecule interaction is one of the fundamental reactions within the global carbon cycle. Here, I summarize recent findings from studies that examine DOM microbe interactions from either the DOM perspective (organic geochemistry) or the microbe perspective (microbial ecology). Gaps in our knowledge are highlighted and future integrative research directions are proposed.
引用
收藏
页码:567 / 599
页数:33
相关论文
共 136 条
[11]  
Arnosti C., 2003, Aquatic Ecosystems, P316
[12]   Microbes, molecules, and marine ecosystems [J].
Azam, F ;
Worden, AZ .
SCIENCE, 2004, 303 (5664) :1622-1624
[13]   THE ECOLOGICAL ROLE OF WATER-COLUMN MICROBES IN THE SEA [J].
AZAM, F ;
FENCHEL, T ;
FIELD, JG ;
GRAY, JS ;
MEYERREIL, LA ;
THINGSTAD, F .
MARINE ECOLOGY PROGRESS SERIES, 1983, 10 (03) :257-263
[14]  
Azam F, 2007, NAT REV MICROBIOL, V5, P782, DOI 10.1038/nrmicro1747
[15]   Novel strains isolated from a coastal aquifer suggest a predatory role for flavobacteria [J].
Banning, Erin C. ;
Casciotti, Karen L. ;
Kujawinski, Elizabeth B. .
FEMS MICROBIOLOGY ECOLOGY, 2010, 73 (02) :254-270
[16]   Growth phase of the diatom Skeletonema marinoi influences the metabolic profile of the cells and the selective feeding of the copepod Calanus spp. [J].
Barofsky, Alexandra ;
Simonelli, Paolo ;
Vidoudez, Charles ;
Troedsson, Christofer ;
Nejstgaard, Jens C. ;
Jakobsen, Hans H. ;
Pohnert, Georg .
JOURNAL OF PLANKTON RESEARCH, 2010, 32 (03) :263-272
[17]   Metabolic profiling reveals growth stage variability in diatom exudates [J].
Barofsky, Alexandra ;
Vidoudez, Charles ;
Pohnert, Georg .
LIMNOLOGY AND OCEANOGRAPHY-METHODS, 2009, 7 :382-390
[18]   Whole genome analysis of the marine Bacteroidetes 'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter [J].
Bauer, Margarete ;
Kube, Michael ;
Teeling, Hanno ;
Richter, Michael ;
Lombardot, Thierry ;
Allers, Elke ;
Wuerdemann, Chris A. ;
Quast, Christian ;
Kuhl, Heiner ;
Knaust, Florian ;
Woebken, Dagmar ;
Bischof, Kerstin ;
Mussmann, Marc ;
Choudhuri, Jomuna V. ;
Meyer, Folker ;
Reinhardt, Richard ;
Amann, Rudolf I. ;
Gloeckner, Frank Oliver .
ENVIRONMENTAL MICROBIOLOGY, 2006, 8 (12) :2201-2213
[19]   Bacterial rhodopsin:: Evidence for a new type of phototrophy in the sea [J].
Béjà, O ;
Aravind, L ;
Koonin, EV ;
Suzuki, MT ;
Hadd, A ;
Nguyen, LP ;
Jovanovich, S ;
Gates, CM ;
Feldman, RA ;
Spudich, JL ;
Spudich, EN ;
DeLong, EF .
SCIENCE, 2000, 289 (5486) :1902-1906
[20]  
Benner R., 2002, Biogeochemistry of Marine Dissolved Organic Matter, P5990, DOI DOI 10.1016/B978-012323841-2/50005-1