Generation of a P1 artificial chromosome library of the Southern pufferfish

被引:5
作者
Amemiya, CT
Amores, A
Ota, T
Mueller, G
Garrity, D
Postlethwait, JH
Litman, GW
机构
[1] Boston Univ, Sch Med, Ctr Human Genet, Boston, MA 02118 USA
[2] Univ Oregon, Inst Neurosci, Eugene, OR 97403 USA
[3] Univ S Florida, Childrens Res Inst, Dept Pediat, St Petersburg, FL 33701 USA
关键词
large-insert cloning; genomic library; restriction fingerprinting; microsatellite;
D O I
10.1016/S0378-1119(01)00525-X
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
We describe the generation of a P1 artificial chromosome genomic library from the Southern pufferfish, Spheroides nephelus. The arrayed library consists of similar to 30,000 clones and has an average insert size of 125-150 kb. The coverage is estimated to encompass seven to eight genome equivalents. The library has been used for isolating numerous genomic clones and for establishing contigs of several multigene families. Analysis of several of the clones from this library suggests a preponderance of CA re eat tracts relative to their abundance in humans. The library and high-density filters have been made available to the scientific public through genomics distribution companies. (C) 2001 Published by Elsevier Science B.V. All rights reserved.
引用
收藏
页码:283 / 289
页数:7
相关论文
共 34 条
[1]   A 2-DIMENSIONAL YAC POOLING STRATEGY FOR LIBRARY SCREENING VIA STS AND ALU-PCR METHODS [J].
AMEMIYA, CT ;
ALEGRIAHARTMAN, MJ ;
ASLANIDIS, C ;
CHEN, C ;
NIKOLIC, J ;
GINGRICH, JC ;
DEJONG, PJ .
NUCLEIC ACIDS RESEARCH, 1992, 20 (10) :2559-2563
[2]  
AMEMIYA CT, 1991, AM ZOOL, V31, P558
[3]  
AMEMIYA CT, 1996, ANAL NONMAMMALIAN GE, P223
[4]   Zebrafish hox clusters and vertebrate genome evolution [J].
Amores, A ;
Force, A ;
Yan, YL ;
Joly, L ;
Amemiya, C ;
Fritz, A ;
Ho, RK ;
Langeland, J ;
Prince, V ;
Wang, YL ;
Westerfield, M ;
Ekker, M ;
Postlethwait, JH .
SCIENCE, 1998, 282 (5394) :1711-1714
[5]   CHARACTERIZATION OF THE PUFFERFISH (FUGU) GENOME AS A COMPACT MODEL VERTEBRATE GENOME [J].
BRENNER, S ;
ELGAR, G ;
SANDFORD, R ;
MACRAE, A ;
VENKATESH, B ;
APARICIO, S .
NATURE, 1993, 366 (6452) :265-268
[6]   GENE REGULATION FOR HIGHER CELLS - A THEORY [J].
BRITTEN, RJ ;
DAVIDSON, EH .
SCIENCE, 1969, 165 (3891) :349-+
[7]  
Brown T. A., 1991, MOL BIOL LABFAX
[8]   Tetraodon fluviatilis, a new puffer fish model for genome studies [J].
CrnogoracJurcevic, T ;
Brown, JR ;
Lehrach, H ;
Schalkwyk, LC .
GENOMICS, 1997, 41 (02) :177-184
[9]   REGULATION OF GENE-EXPRESSION - POSSIBLE ROLE OF REPETITIVE SEQUENCES [J].
DAVIDSON, EH ;
BRITTEN, RJ .
SCIENCE, 1979, 204 (4397) :1052-1059
[10]   ORGANIZATION, TRANSCRIPTION, AND REGULATION IN ANIMAL GENOME [J].
DAVIDSON, EH ;
BRITTEN, RJ .
QUARTERLY REVIEW OF BIOLOGY, 1973, 48 (04) :565-613