16S rDNA sequence analysis of culturable marine biofilm forming bacteria from a ship's hull

被引:37
作者
Inbakandan, D. [1 ,2 ]
Murthy, P. Sriyutha [3 ]
Venkatesan, R. [4 ]
Khan, S. Ajmal [2 ]
机构
[1] Sathyabama Univ, Ctr Ocean Res, Madras 600119, Tamil Nadu, India
[2] Annamalai Univ, Ctr Adv Study Marine Biol, Port Nova 608502, India
[3] IGCAR, WSCL, BARC Facil, Biofouling & Biofilm Proc Sect, Kalpakkam 603102, Tamil Nadu, India
[4] Natl Inst Ocean Technol, Madras 600100, Tamil Nadu, India
关键词
marine bacteria; biofilm; 16S rDNA sequence; phylogenetic analysis; anthropogenic origin; FLAVOBACTERIUM-ODORATUM; MYROIDES-ODORATUS; ESCHERICHIA-COLI; GEN; NOV; SURFACES; IDENTIFICATION; CELLS; RECLASSIFICATION; EXIGUOBACTERIUM; COLONIZATION;
D O I
10.1080/08927014.2010.530347
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Marine bacteria from the hull of a ship in the form of biofilms or microfouling were isolated, cultured, and identified by phylogenetic analysis using 16S rDNA sequences. With an average length of 946 bp, all the 16 sequences were classified using the Ribosomal database project (RDP) and were submitted to the National Center for Biotechnology Information. Phylogenetic analysis using 16S rDNA sequences indicated that the 16 strains belonged to the Firmicutes (IK-MB6 Exiguobacterium aurantiacum, IK-MB7 Exiguobacterium arabatum, IK-MB8 Exiguobacterium arabatum, IK-MB9 Jeotgalibacillus alimentarius, IK-MB10 Bacillus megaterium, IK-MB11 Bacillus pumilus, IK-MB12 Bacillus pumilus, IK-MB13 Bacillus pumilus, IK-MB14 Bacillus megaterium), High GC, Gram-positive bacteria (IK-MB2 Micrococcus luteus, IK-MB5 Micrococcus luteus, IK-MB16 Arthrobacter mysorens), G-Proteobacteria (IK-MB3 Halomonas aquamarina, IK-MB15 Halotalea alkalilenta), CFB group bacteria (IK-MB1 Myroides odoratimimus), and Enterobacteria (IK-MB4 Proteus mirabilis). Among the 16 strains, representatives of the Firmicutes were dominant (56.25%) compared to the high GC, Gram-positive bacteria (18.75%), G-Proteobacteria (12.5%), CFB group bacteria (6.25%), and Enterobacteria (6.25%). Analysis revealed that majority of marine species found in marine biofilm are of anthropogenic origin.
引用
收藏
页码:893 / 899
页数:7
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