Gauge field theory of chirally folded homopolymers with applications to folded proteins

被引:40
作者
Danielsson, Ulf H. [1 ]
Lundgren, Martin [1 ]
Niemi, Antti J. [1 ,2 ,3 ]
机构
[1] Uppsala Univ, Dept Phys & Astron, S-75108 Uppsala, Sweden
[2] Univ Tours, CNRS, UMR 6083, Lab Math & Phys Theor, F-37200 Tours, France
[3] Chern Inst Math, Tianjin 300071, Peoples R China
来源
PHYSICAL REVIEW E | 2010年 / 82卷 / 02期
基金
瑞典研究理事会;
关键词
EXPONENTS;
D O I
10.1103/PhysRevE.82.021910
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
We combine the principle of gauge invariance with extrinsic string geometry to develop a lattice model that can be employed to theoretically describe properties of chiral, unbranched homopolymers. We find that in its low temperature phase the model is in the same universality class with proteins that are deposited in the Protein Data Bank, in the sense of the compactness index. We apply the model to analyze various statistical aspects of folded proteins. Curiously we find that it can produce results that are a very good good match to the data in the Protein Data Bank.
引用
收藏
页数:5
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