Characterising pandemic severity and transmissibility from data collected during first few hundred studies

被引:28
作者
Black, Andrew J. [1 ,8 ]
Geard, Nicholas [2 ,3 ]
McCaw, James M. [2 ,4 ,5 ]
McVernon, Jodie [2 ,5 ,6 ,7 ]
Ross, Joshua V. [1 ,8 ]
机构
[1] Univ Adelaide, Sch Math Sci, Adelaide, SA 5005, Australia
[2] Univ Melbourne, Melbourne Sch Populat & Global Hlth, Ctr Epidemiol & Biostat, Melbourne, Vic 3010, Australia
[3] Univ Melbourne, Sch Comp & Informat Syst, Melbourne Sch Engn, Melbourne, Vic 3010, Australia
[4] Univ Melbourne, Sch Math & Stat, Melbourne, Vic 3010, Australia
[5] Royal Childrens Hosp, Murdoch Childrens Res Inst, Melbourne, Vic, Australia
[6] Univ Melbourne, Peter Doherty Inst Infect & Immun, Melbourne, Vic 3000, Australia
[7] Royal Melbourne Hosp, Melbourne, Vic 3000, Australia
[8] Univ Adelaide, Sch Math Sci, ACEMS, Adelaide, SA 5005, Australia
基金
澳大利亚国家健康与医学研究理事会; 澳大利亚研究理事会;
关键词
Pandemic; Influenza; Households; Markov chain; Parameter inference; 2009; INFLUENZA; EPIDEMIC; DYNAMICS; COMPUTATION; INFERENCE; MODELS; IMPACT; SIZE;
D O I
10.1016/j.epidem.2017.01.004
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
Early estimation of the probable impact of a pandemic influenza outbreak can assist public health authorities to ensure that response measures are proportionate to the scale of the threat. Recently, frameworks based on transmissibility and severity have been proposed for initial characterization of pandemic impact. Data requirements to inform this assessment may be provided by First Few Hundred (FF100) studies, which involve surveillancepossibly in person, or via telephoneof household members of confirmed cases. This process of enhanced case finding enables detection of cases across the full spectrum of clinical severity, including the date of symptom onset. Such surveillance is continued until data for a few hundred cases, or satisfactory characterization of the pandemic strain, has been achieved. We present a method for analysing these data, at the household level, to provide a posterior distribution for the parameters of a model that can be interpreted in terms of severity and transmissibility of a pandemic strain. We account for imperfect case detection, where individuals are only observed with some probability that can increase after a first case is detected. Furthermore, we test this methodology using simulated data generated by an independent model, developed for a different purpose and incorporating more complex disease and social dynamics. Our method recovers transmissibility and severity parameters to a high degree of accuracy and provides a computationally efficient approach to estimating the impact of an outbreak in its early stages. (C) 2017 The Author(s). Published by Elsevier B.V.
引用
收藏
页码:61 / 73
页数:13
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