Substitution of Aromatic Residues with Polar Residues in the Active Site Pocket of epi-Isozizaene Synthase Leads to the Generation of New Cyclic Sesquiterpenes

被引:24
作者
Blank, Patrick N. [1 ]
Barrow, Golda H. [1 ]
Chou, Wayne K. W. [2 ]
Duan, Lian [2 ]
Cane, David E. [2 ]
Christianson, David W. [1 ]
机构
[1] Univ Penn, Dept Chem, Roy & Diana Vagelos Labs, Philadelphia, PA 19104 USA
[2] Brown Univ, Dept Chem, Box H, Providence, RI 02912 USA
关键词
STREPTOMYCES-COELICOLOR; TERPENE BIOSYNTHESIS; MECHANISTIC INSIGHTS; INDIAN SANDALWOOD; CRYSTAL-STRUCTURE; DIVERSITY; CHEMISTRY; PRODUCTS; LIMONENE; MENTHOL;
D O I
10.1021/acs.biochem.7b00895
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The sesquiterpene cyclase epi-isozizaene synthase (EIZS) catalyzes the cyclization of farnesyl diphosphate to form the tricyclic hydrocarbon precursor of the antibiotic albaflavenone. The hydrophobic active site pocket of EIZS serves as a template as it binds and chaperones the flexible substrate and carbocation intermediates through the conformations required for a multistep reaction sequence. We previously demonstrated that the substitution of hydrophobic residues with other hydrophobic residues remolds the template and expands product chemodiversity [Li, R., Chou, W. K. W., Himmelberger, J. A., Litwin, K. M., Harris, G. G., Cane, D. E., and Christianson, D. W. (2014) Biochemistry 53, 1155-1168]. Here, we show that the substitution of hydrophobic residues specifically, Y69, F95, F96, and W203-with polar side chains also yields functional enzyme catalysts that expand product chemodiversity. Fourteen new EIZS mutants are reported that generate product arrays in which eight new sesquiterpene products have been identified. Of note, some mutants generate acyclic and cyclic hydroxylated products, suggesting that the introduction of polarity in the hydrophobic pocket facilitates the binding of water capable of quenching carbocation intermediates. Furthermore, the substitution of polar residues for F96 yields high-fidelity sesquisabinene synthases. Crystal structures of selected mutants reveal that residues defining the three-dimensional contour of the hydrophobic pocket can be substituted without triggering significant structural changes elsewhere in the active site. Thus, more radical ndnpolar polar amino acid substitutions should be considered when terpenoid cyclase active sites are remolded by mutagenesis with the goal of exploring and expanding product chemodiversity.
引用
收藏
页码:5798 / 5811
页数:14
相关论文
共 51 条
[1]   Structure of Epi-Isozizaene Synthase from Streptomyces coelicolor A3(2), a Platform for New Terpenoid Cyclization Templates [J].
Aaron, Julie A. ;
Lin, Xin ;
Cane, David E. ;
Christianson, David W. .
BIOCHEMISTRY, 2010, 49 (08) :1787-1797
[2]   PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution [J].
Adams, Paul D. ;
Afonine, Pavel V. ;
Bunkoczi, Gabor ;
Chen, Vincent B. ;
Davis, Ian W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Hung, Li-Wei ;
Kapral, Gary J. ;
Grosse-Kunstleve, Ralf W. ;
McCoy, Airlie J. ;
Moriarty, Nigel W. ;
Oeffner, Robert ;
Read, Randy J. ;
Richardson, David C. ;
Richardson, Jane S. ;
Terwilliger, Thomas C. ;
Zwart, Peter H. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :213-221
[3]  
[Anonymous], 2015, The PyMOL molecular graphics system
[4]   Hedycaryol Synthase in Complex with Nerolidol Reveals Terpene Cyclase Mechanism [J].
Baer, Philipp ;
Rabe, Patrick ;
Citron, Christian A. ;
Mann, Carina C. de Oliveira ;
Kaufmann, Norman ;
Groll, Michael ;
Dickschat, Jeroen S. .
CHEMBIOCHEM, 2014, 15 (02) :213-216
[5]   iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM [J].
Battye, T. Geoff G. ;
Kontogiannis, Luke ;
Johnson, Owen ;
Powell, Harold R. ;
Leslie, Andrew G. W. .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2011, 67 :271-281
[6]   Tomato-produced 7-epizingiberene and R-curcumene act as repellents to whiteflies [J].
Bleeker, Petra M. ;
Diergaarde, Paul J. ;
Ament, Kai ;
Schuetz, Stefan ;
Johne, Bettina ;
Dijkink, Jan ;
Hiemstra, Henk ;
de Gelder, Rene ;
de Both, Michiel T. J. ;
Sabelis, Maurice W. ;
Haring, Michel A. ;
Schuurink, Robert C. .
PHYTOCHEMISTRY, 2011, 72 (01) :68-73
[7]   Multi-domain terpenoid cyclase architecture and prospects for proximity in bifunctional catalysis [J].
Chen, Mengbin ;
Harris, Golda G. ;
Pemberton, Travis A. ;
Christianson, David W. .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2016, 41 :27-37
[8]   Mechanistic Insights from the Binding of Substrate and Carbocation Intermediate Analogues to Aristolochene Synthase [J].
Chen, Mengbin ;
Al-lami, Naeemah ;
Janvier, Marine ;
D'Antonio, Edward L. ;
Faraldos, Juan A. ;
Cane, David E. ;
Allemann, Rudolf K. ;
Christianson, David W. .
BIOCHEMISTRY, 2013, 52 (32) :5441-5453
[9]   MolProbity: all-atom structure validation for macromolecular crystallography [J].
Chen, Vincent B. ;
Arendall, W. Bryan, III ;
Headd, Jeffrey J. ;
Keedy, Daniel A. ;
Immormino, Robert M. ;
Kapral, Gary J. ;
Murray, Laura W. ;
Richardson, Jane S. ;
Richardson, David C. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :12-21
[10]   Structural biology and chemistry of the terpenoid cyclases [J].
Christianson, David W. .
CHEMICAL REVIEWS, 2006, 106 (08) :3412-3442