A Mechanistic Analysis of Enzymatic Degradation of Organohalogen Compounds

被引:22
作者
Kurihara, Tatsuo [1 ]
机构
[1] Kyoto Univ, Inst Chem Res, Kyoto 6110011, Japan
基金
日本科学技术振兴机构; 日本学术振兴会;
关键词
L-2-haloacid dehalogenase; DL-2-haloacid dehalogenase; fluoroacetate dehalogenase; 2-haloacrylate reductase; 2-haloacrylate hydratase; L-2-HALO ACID DEHALOGENASE; PSEUDOMONAS SP YL; FLUOROACETATE DEHALOGENASE; DL-2-HALOACID DEHALOGENASE; CRYSTAL-STRUCTURE; ACTIVE-SITE; CATALYTIC MECHANISM; METHANOBACTERIUM-THERMOAUTOTROPHICUM; 2-HALOACRYLATE REDUCTASE; QUINONE OXIDOREDUCTASE;
D O I
10.1271/bbb.100746
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Enzymes that catalyze the conversion of organohalogen compounds have been attracting a great deal of attention, partly because of their possible applications in environmental technology and the chemical industry. We have studied the mechanisms of enzymatic degradation of various organic halo acids. In the reaction of L-2-haloacid dehalogenase and fluoroacetate dehalogenase, the carboxylate group of the catalytic aspartate residue nucleophilically attacked the alpha-carbon atom of the substrates to displace the halogen atom. In the reaction catalyzed by DL-2-haloacid dehalogenase, a water molecule directly attacked the substrate to displace the halogen atom. In the course of studies on the metabolism of 2-chloroacrylate, we discovered two new enzymes. 2-Haloacrylate reductase catalyzed the asymmetric reduction of 2-haloacrylate to produce L-2-haloalkanoic acid in an NADPH-dependent manner. 2-Haloacrylate hydratase catalyzed the hydration of 2-haloacrylate to produce pyruvate. The enzyme is unique in that it catalyzes the non-redox reaction in an FADH(2)-dependent manner.
引用
收藏
页码:189 / 198
页数:10
相关论文
共 71 条
[1]   The catalytic domain of the P-type ATPase has the haloacid dehalogenase fold [J].
Aravind, L ;
Galperin, MY ;
Koonin, EV .
TRENDS IN BIOCHEMICAL SCIENCES, 1998, 23 (04) :127-129
[2]   The many faces of vitamin B12:: Catalysis by cobalamin-dependent enzymes [J].
Banerjee, R ;
Ragsdale, SW .
ANNUAL REVIEW OF BIOCHEMISTRY, 2003, 72 :209-247
[3]   DETECTION AND MEASUREMENT OF FLUOROACETATE IN PLANT-EXTRACTS BY F-19 NMR [J].
BARON, ML ;
BOTHROYD, CM ;
ROGERS, GI ;
STAFFA, A ;
RAE, ID .
PHYTOCHEMISTRY, 1987, 26 (08) :2293-2295
[4]   Flavoenzymes that catalyse reactions with no net redox change [J].
Bornemann, S .
NATURAL PRODUCT REPORTS, 2002, 19 (06) :761-772
[5]   Structure of FAD-bound L-aspartate oxidase: Insight into substrate specificity and catalysis [J].
Bossi, RT ;
Negri, A ;
Tedeschi, G ;
Mattevi, A .
BIOCHEMISTRY, 2002, 41 (09) :3018-3024
[6]   Crystal structures of native and inactivated cis-3-chloroacrylic acid dehalogenase -: Structural basis for substrate specificity and inactivation by (R)-oxirane-2-carboxylate [J].
de Jong, Rene M. ;
Bazzacco, Paola ;
Poelarends, Gerrit J. ;
Johnson, William H., Jr. ;
Kim, Yoon Jae ;
Burks, Elizabeth A. ;
Serrano, Hector ;
Thunnissen, Andy-Mark W. H. ;
Whitman, Christian P. ;
Dijkstra, Bauke W. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (04) :2440-2449
[7]   Structure and mechanism of bacterial dehalogenases: different ways to cleave a carbon-halogen bond [J].
de Jong, RM ;
Dijkstra, BW .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2003, 13 (06) :722-730
[8]   Structural and sequence comparisons of quinone oxidoreductase, zeta-crystallin, and glucose and alcohol dehydrogenases [J].
Edwards, KJ ;
Barton, JD ;
Rossjohn, J ;
Thorn, JM ;
Taylor, GL ;
Ollis, DL .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1996, 328 (01) :173-183
[9]   Biochemical and genetic bases of dehalorespiration [J].
Futagami, Taiki ;
Goto, Masatoshi ;
Furukawa, Kensuke .
CHEMICAL RECORD, 2008, 8 (01) :1-12
[10]   CARBON-FLUORINE BOND IN COMPOUNDS OF BIOLOGICAL INTEREST [J].
GOLDMAN, P .
SCIENCE, 1969, 164 (3884) :1123-&