Estimating rate constants from single ion channel currents when the initial distribution is known

被引:3
作者
The, YK
Fernandez, J
Popa, MO
Lerche, H
Timmer, J
机构
[1] Univ Freiburg, Inst Phys, D-79104 Freiburg, Germany
[2] Univ Freiburg, Freiburger Zentrum Datenanal & Modellbildung, D-79104 Freiburg, Germany
[3] Univ Ulm, Abt Angew Physiol & Neurol Klin, D-89081 Ulm, Germany
来源
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS | 2005年 / 34卷 / 04期
关键词
hidden Markov models; aggregated Markov models; identifiability; maximum likelihood estimation; sodium channel;
D O I
10.1007/s00249-004-0451-y
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Single ion channel currents can be analysed by hidden or aggregated Markov models. A classical result from Fredkin et al. (Proceedings of the Berkeley conference in honor of Jerzy Neyman and Jack Kiefer, vol I, pp 269-289, 1985) states that the maximum number of identifiable parameters is bounded by 2n(o)n(c), where n(o) and n(c) denote the number of open and closed states, respectively. We show that this bound can be overcome when the probabilities of the initial distribution are known and the data consist of several sweeps.
引用
收藏
页码:306 / 313
页数:8
相关论文
共 29 条
[21]   Hidden Markov modeling for single channel kinetics with filtering and correlated noise [J].
Qin, F ;
Auerbach, A ;
Sachs, F .
BIOPHYSICAL JOURNAL, 2000, 79 (04) :1928-1944
[22]   A TUTORIAL ON HIDDEN MARKOV-MODELS AND SELECTED APPLICATIONS IN SPEECH RECOGNITION [J].
RABINER, LR .
PROCEEDINGS OF THE IEEE, 1989, 77 (02) :257-286
[23]   INACTIVATION VIEWED THROUGH SINGLE SODIUM-CHANNELS [J].
VANDENBERG, CA ;
HORN, R .
JOURNAL OF GENERAL PHYSIOLOGY, 1984, 84 (04) :535-564
[24]   SINGLE-CHANNEL, MACROSCOPIC, AND GATING CURRENTS FROM SODIUM-CHANNELS IN THE SQUID GIANT-AXON [J].
VANDENBERG, CA ;
BEZANILLA, F .
BIOPHYSICAL JOURNAL, 1991, 60 (06) :1499-1510
[25]   Identification of hidden Markov models for ion channel currents - Part II: State-dependent excess noise [J].
Venkataramanan, L ;
Kuc, R ;
Sigworth, FJ .
IEEE TRANSACTIONS ON SIGNAL PROCESSING, 1998, 46 (07) :1916-1929
[26]   Identification of hidden Markov models for ion channel currents - Part I: Colored background noise [J].
Venkataramanan, L ;
Walsh, JL ;
Kuc, R ;
Sigworth, FJ .
IEEE TRANSACTIONS ON SIGNAL PROCESSING, 1998, 46 (07) :1901-1915
[27]   Identification of hidden Markov models for ion channel currents - Part III: Bandlimited, sampled data [J].
Venkataramanan, L ;
Kuc, R ;
Sigworth, FJ .
IEEE TRANSACTIONS ON SIGNAL PROCESSING, 2000, 48 (02) :376-385
[28]   Estimating transition rates in aggregated Markov models of ion channel gating with loops and with nearly equal dwell times [J].
Wagner, M ;
Michalek, S ;
Timmer, J .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1999, 266 (1431) :1919-1926
[29]   A CLUSTER OF HYDROPHOBIC AMINO-ACID-RESIDUES REQUIRED FOR FAST NA+-CHANNEL INACTIVATION [J].
WEST, JW ;
PATTON, DE ;
SCHEUER, T ;
WANG, YL ;
GOLDIN, AL ;
CATTERALL, WA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (22) :10910-10914