Assessment of circulating tumor DNA in pediatric solid tumors: The promise of liquid biopsies

被引:45
作者
Abbou, Samuel D. [1 ,2 ]
Shulman, David S. [1 ]
DuBois, Steven G. [1 ]
Crompton, Brian D. [1 ,3 ]
机构
[1] Dana Farber Boston Childrens Canc & Blood Disorde, 450 Brookline Ave, Boston, MA 02215 USA
[2] Gustave Roussy, Dept Oncol Children & Adolescents, Villejuif, France
[3] Broad Inst, Cambridge, MA USA
关键词
circulating tumor DNA; pediatric cancer; next-generation sequencing; digital PCR; liquid biopsy; CELL-FREE DNA; COLORECTAL-CANCER PATIENTS; FACTOR RECEPTOR MUTATIONS; DIGITAL PCR; COPY NUMBER; SERUM DNA; GENERAL-ANESTHESIA; MYCN AMPLIFICATION; RESIDUAL DISEASE; PLASMA DNA;
D O I
10.1002/pbc.27595
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Circulating tumor DNA can be detected in the blood and body fluids of patients using ultrasensitive technologies, which have the potential to improve cancer diagnosis, risk stratification, noninvasive tumor profiling, and tracking of treatment response and disease recurrence. As we begin to apply "liquid biopsy" strategies in children with cancer, it is important to tailor our efforts to the unique genomic features of these tumors and address the technical and logistical challenges of integrating biomarker testing. This article reviews the literature demonstrating the feasibility of applying liquid biopsy to pediatric solid malignancies and suggests new directions for future studies.
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页数:12
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共 105 条
[1]   Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors [J].
Adalsteinsson, Viktor A. ;
Ha, Gavin ;
Freeman, Samuel S. ;
Choudhury, Atish D. ;
Stover, Daniel G. ;
Parsons, Heather A. ;
Gydush, Gregory ;
Reed, Sarah C. ;
Rotem, Denisse ;
Rhoades, Justin ;
Loginov, Denis ;
Livitz, Dimitri ;
Rosebrock, Daniel ;
Leshchiner, Ignaty ;
Kim, Jaegil ;
Stewart, Chip ;
Rosenberg, Mara ;
Francis, Joshua M. ;
Zhang, Cheng-Zhong ;
Cohen, Ofir ;
Oh, Coyin ;
Ding, Huiming ;
Polak, Paz ;
Lloyd, Max ;
Mahmud, Sairah ;
Helvie, Karla ;
Merrill, Margaret S. ;
Santiago, Rebecca A. ;
O'Connor, Edward P. ;
Jeong, Seong H. ;
Leeson, Rachel ;
Barry, Rachel M. ;
Kramkowski, Joseph F. ;
Zhang, Zhenwei ;
Polacek, Laura ;
Lohr, Jens G. ;
Schleicher, Molly ;
Lipscomb, Emily ;
Saltzman, Andrea ;
Oliver, Nelly M. ;
Marini, Lori ;
Waks, Adrienne G. ;
Harshman, Lauren C. ;
Tolaney, Sara M. ;
Van Allen, Eliezer M. ;
Winer, Eric P. ;
Lin, Nancy U. ;
Nakabayashi, Mari ;
Taplin, Mary-Ellen ;
Johannessen, Cory M. .
NATURE COMMUNICATIONS, 2017, 8
[2]   Detection of circulating tumour DNA in patients with aggressive B-cell non-Hodgkin lymphoma [J].
Armand, Philippe ;
Oki, Yasuhiro ;
Neuberg, Donna S. ;
Faham, Malek ;
Cummings, Craig ;
Klinger, Mark ;
Weng, Li ;
Bhattar, Sangeetha ;
LaCasce, Ann S. ;
Jacobsen, Eric D. ;
Davids, Matthew S. ;
Jacobson, Caron ;
Fisher, David C. ;
Brown, Jennifer R. ;
Fowler, Nathan H. ;
Rodriguez, M. Alma ;
Wallace, Michael J. ;
Neelapu, Sattva S. ;
Rodig, Scott ;
Younes, Anas ;
Freedman, Arnold S. .
BRITISH JOURNAL OF HAEMATOLOGY, 2013, 163 (01) :123-126
[3]  
Balaña C, 2003, CLIN CANCER RES, V9, P1461
[4]  
Barris David M, 2018, Oncotarget, V9, P12695, DOI 10.18632/oncotarget.24268
[5]   Detection of Circulating Tumor DNA in Early- and Late-Stage Human Malignancies [J].
Bettegowda, Chetan ;
Sausen, Mark ;
Leary, Rebecca J. ;
Kinde, Isaac ;
Wang, Yuxuan ;
Agrawal, Nishant ;
Bartlett, Bjarne R. ;
Wang, Hao ;
Luber, Brandon ;
Alani, Rhoda M. ;
Antonarakis, Emmanuel S. ;
Azad, Nilofer S. ;
Bardelli, Alberto ;
Brem, Henry ;
Cameron, John L. ;
Lee, Clarence C. ;
Fecher, Leslie A. ;
Gallia, Gary L. ;
Gibbs, Peter ;
Le, Dung ;
Giuntoli, Robert L. ;
Goggins, Michael ;
Hogarty, Michael D. ;
Holdhoff, Matthias ;
Hong, Seung-Mo ;
Jiao, Yuchen ;
Juhl, Hartmut H. ;
Kim, Jenny J. ;
Siravegna, Giulia ;
Laheru, Daniel A. ;
Lauricella, Calogero ;
Lim, Michael ;
Lipson, Evan J. ;
Marie, Suely Kazue Nagahashi ;
Netto, George J. ;
Oliner, Kelly S. ;
Olivi, Alessandro ;
Olsson, Louise ;
Riggins, Gregory J. ;
Sartore-Bianchi, Andrea ;
Schmidt, Kerstin ;
Shih, Ie-Ming ;
Oba-Shinjo, Sueli Mieko ;
Siena, Salvatore ;
Theodorescu, Dan ;
Tie, Jeanne ;
Harkins, Timothy T. ;
Veronese, Silvio ;
Wang, Tian-Li ;
Weingart, Jon D. .
SCIENCE TRANSLATIONAL MEDICINE, 2014, 6 (224)
[6]   Digital PCR for quantification of recurrent and potentially actionable somatic mutations in circulating free DNA from patients with diffuse large B-cell lymphoma [J].
Camus, Vincent ;
Sarafan-Vasseur, Nasrin ;
Bohers, Elodie ;
Dubois, Sydney ;
Mareschal, Sylvain ;
Bertrand, Philippe ;
Viailly, Pierre-Julien ;
Ruminy, Philippe ;
Maingonnat, Catherine ;
Lemasle, Emilie ;
Stamatoullas, Aspasia ;
Picquenot, Jean-Michel ;
Cornic, Marie ;
Beaussire, Ludivine ;
Bastard, Christian ;
Frebourg, Thierry ;
Tilly, Herve ;
Jardin, Fabrice .
LEUKEMIA & LYMPHOMA, 2016, 57 (09) :2171-2179
[7]   Methylome analysis identifies a Wilms tumor epigenetic biomarker detectable in blood [J].
Charlton, Jocelyn ;
Williams, Richard D. ;
Weeks, Mark ;
Sebire, Neil J. ;
Popov, Sergey ;
Vujanic, Gordan ;
Mifsud, William ;
Alcaide-German, Marisa ;
Butcher, Lee M. ;
Beck, Stephan .
GENOME BIOLOGY, 2014, 15 (08)
[8]   Minimal Residual Disease-Based Risk Stratification in Chinese Childhood Acute Lymphoblastic Leukemia by Flow Cytometry and Plasma DNA Quantitative Polymerase Chain Reaction [J].
Cheng, Suk Hang ;
Lau, Kin Mang ;
Li, Chi Kong ;
Chan, Natalie P. H. ;
Ip, Rosalina K. L. ;
Cheng, Chi Keung ;
Lee, Vincent ;
Shing, Matthew M. K. ;
Leung, Alex W. K. ;
Ha, Shau Yin ;
Cheuk, Daniel K. L. ;
Lee, Anselm C. W. ;
Li, Chak Ho ;
Luk, Chung Wing ;
Ling, Siu Cheung ;
Hrusak, Ondrej ;
Mejstrikova, Ester ;
Leung, Yonna ;
Ng, Margaret H. L. .
PLOS ONE, 2013, 8 (07)
[9]   Whole-Exome Sequencing of Cell-Free DNA Reveals Temporo-spatial Heterogeneity and Identifies Treatment-Resistant Clones in Neuroblastoma [J].
Chicard, Mathieu ;
Colmet-Daage, Leo ;
Clement, Nathalie ;
Danzon, Adrien ;
Bohec, Mylene ;
Bernard, Virginie ;
Baulande, Sylvain ;
Bellini, Angela ;
Deveau, Paul ;
Pierron, Gaelle ;
Lapouble, Eve ;
Janoueix-Lerosey, Isabelle ;
Peuchmaur, Michel ;
Corradini, Nadege ;
Defachelles, Anne Sophie ;
Valteau-Couanet, Dominique ;
Michon, Jean ;
Combaret, Valerie ;
Delattre, Olivier ;
Schleiermacher, Gudrun .
CLINICAL CANCER RESEARCH, 2018, 24 (04) :939-949
[10]   Genomic Copy Number Profiling Using Circulating Free Tumor DNA Highlights Heterogeneity in Neuroblastoma [J].
Chicard, Mathieu ;
Boyault, Sandrine ;
Daage, Leo Colmet ;
Richer, Wilfrid ;
Gentien, David ;
Pierron, Gaelle ;
Lapouble, Eve ;
Bellini, Angela ;
Clement, Nathalie ;
Iacono, Isabelle ;
Brejon, Stephanie ;
Carrere, Marjorie ;
Reyes, Cecile ;
Hocking, Toby ;
Bernard, Virginie ;
Peuchmaur, Michel ;
Corradini, Nadege ;
Faure-Conter, Cecile ;
Coze, Carole ;
Plantaz, Dominique ;
Defachelles, Anne Sophie ;
Thebaud, Estelle ;
Gambart, Marion ;
Millot, Frederic ;
Valteau-Couanet, Dominique ;
Michon, Jean ;
Puisieux, Alain ;
Delattre, Olivier ;
Combaret, Valerie ;
Schleiermacher, Gudrun .
CLINICAL CANCER RESEARCH, 2016, 22 (22) :5564-5573