Error estimate of short-range force calculation in inhomogeneous molecular systems

被引:9
|
作者
Wang, Han [1 ,2 ,3 ]
Schuette, Christof [3 ]
Zhang, Pingwen [1 ,2 ]
机构
[1] Peking Univ, LMAM, Beijing, Peoples R China
[2] Peking Univ, Sch Math Sci, Beijing, Peoples R China
[3] Free Univ Berlin, Inst Math, Berlin, Germany
来源
PHYSICAL REVIEW E | 2012年 / 86卷 / 02期
基金
中国国家自然科学基金;
关键词
PARTICLE MESH EWALD; SURFACE-TENSION; DYNAMICS; SUMS; SIMULATIONS; INTERFACE; ACCURACY; FLUID; POINT;
D O I
10.1103/PhysRevE.86.026704
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
In the present paper, we develop an accurate error estimate of the nonbonded short-range interactions for the inhomogeneous molecular systems. The root-mean-square force error is proved to be decomposed into three additive parts: the homogeneity error, the inhomogeneity error, and the correlation error. The magnitude of the inhomogeneity error, which is dominant in the interfacial regions, can be more than one order of magnitude larger than the homogeneity error. This is the reason why a standard simulation with fixed cutoff radius is either less accurate if the cutoff is too small, or wastes considerable computational effort if the cutoff is too large. Therefore, based on the error estimate, the adaptive cutoff and long-range force correction methods are proposed to boost the efficiency and accuracy of the simulation, respectively. The way of correcting the long-range contribution of pressure is also developed for the inhomogeneous system. The effectiveness of the proposed methods is demonstrated by molecular dynamics simulations of the liquid-vapor equilibrium and the nanoscale particle collision. Different roles of the homogeneity error and inhomogeneity error are also discussed.
引用
收藏
页数:12
相关论文
共 50 条
  • [1] A short-range force
    Sidharth, BG
    INTERNATIONAL JOURNAL OF THEORETICAL PHYSICS, 2005, 44 (08) : 1303 - 1305
  • [2] A Short-Range Force
    B. G. Sidharth
    International Journal of Theoretical Physics, 2005, 44 : 1303 - 1305
  • [3] A short-range force
    Sidharth, B
    INTERNATIONAL JOURNAL OF THEORETICAL PHYSICS, 2005, 44 (05) : 605 - 607
  • [4] A Short-Range Force
    B. G. Sidharth
    International Journal of Theoretical Physics, 2005, 44 : 605 - 607
  • [5] Enabling unstructured domain decompositions for inhomogeneous short-range molecular dynamics in ESPResSo
    Hirschmann, Steffen
    Glass, Colin W.
    Pflueger, Dirk
    EUROPEAN PHYSICAL JOURNAL-SPECIAL TOPICS, 2019, 227 (14): : 1779 - 1788
  • [6] Enabling unstructured domain decompositions for inhomogeneous short-range molecular dynamics in ESPResSo
    Steffen Hirschmann
    Colin W. Glass
    Dirk Pflüger
    The European Physical Journal Special Topics, 2019, 227 : 1779 - 1788
  • [7] CALCULATION OF SHORT-RANGE ELECTRONIC POTENTIALS
    RICO, JF
    LOPEZ, R
    PANIAGUA, M
    FERNANDEZALONSO, JI
    ANALES DE QUIMICA SERIE A-QUIMICA FISICA Y QUIMICA TECNICA, 1986, 82 (01): : 84 - 88
  • [8] On the dynamics of inhomogeneous short-range DNA interactions at a defect
    M. Tantawy
    H. I. Abdel-Gawad
    The European Physical Journal Plus, 135
  • [9] On the dynamics of inhomogeneous short-range DNA interactions at a defect
    Tantawy, M.
    Abdel-Gawad, H., I
    EUROPEAN PHYSICAL JOURNAL PLUS, 2020, 135 (05):
  • [10] Calculation of short-range interactions between proteins
    Asthagiri, D
    Neal, BL
    Lenhoff, AM
    BIOPHYSICAL CHEMISTRY, 1999, 78 (03) : 219 - 231