Challenging Density Functional Theory Calculations with Hemes and Porphyrins

被引:24
|
作者
de Visser, Sam P. [1 ,2 ]
Stillman, Martin J. [3 ]
机构
[1] Univ Manchester, Manchester Inst Biotechnol, 131 Princess St, Manchester M1 7DN, Lancs, England
[2] Univ Manchester, Sch Chem Engn & Analyt Sci, 131 Princess St, Manchester M1 7DN, Lancs, England
[3] Univ Western Ontario, Dept Chem, London, ON N6A 5B7, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
DFT; enzyme mechanism; MCD spectroscopy; Ga(III) PPIX; chlorophylls; CYTOCHROME-C PEROXIDASE; BAND DECONVOLUTION ANALYSIS; ATOM TRANSFER REACTIVITY; DICHROISM SPECTRAL DATA; CRYSTAL-STRUCTURE; COMPOUND-I; SUBSTRATE HYDROXYLATION; HORSERADISH-PEROXIDASE; NONHEME IRON(IV)-OXO; STYRENE EPOXIDATION;
D O I
10.3390/ijms17040519
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In this paper we review recent advances in computational chemistry and specifically focus on the chemical description of heme proteins and synthetic porphyrins that act as both mimics of natural processes and technological uses. These are challenging biochemical systems involved in electron transfer as well as biocatalysis processes. In recent years computational tools have improved considerably and now can reproduce experimental spectroscopic and reactivity studies within a reasonable error margin (several kcal.mol(-1)). This paper gives recent examples from our groups, where we investigated heme and synthetic metal-porphyrin systems. The four case studies highlight how computational modelling can correctly reproduce experimental product distributions, predicted reactivity trends and guide interpretation of electronic structures of complex systems. The case studies focus on the calculations of a variety of spectroscopic features of porphyrins and show how computational modelling gives important insight that explains the experimental spectra and can lead to the design of porphyrins with tuned properties.
引用
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页数:25
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