Intrinsically Disordered Proteins and Intrinsically Disordered Protein Regions

被引:777
作者
Oldfield, Christopher J. [1 ]
Dunker, A. Keith [1 ]
机构
[1] Indiana Univ Sch Med, Ctr Computat Biol & Bioinformat, Indianapolis, IN 46202 USA
来源
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 83 | 2014年 / 83卷
关键词
rheomorphic; natively; inherently; unstructured; unfolded; flexible; malleable; chameleon; MOLECULAR RECOGNITION FEATURES; C-TERMINAL DOMAIN; IN-CELL NMR; CALCIUM-PHOSPHATE NANOCLUSTERS; AMINO-ACID-SEQUENCE; STRUCTURAL DISORDER; UNSTRUCTURED PROTEINS; FUNCTIONAL ANTHOLOGY; WEB SERVER; X-RAY;
D O I
10.1146/annurev-biochem-072711-164947
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Intrinsically disordered proteins (IDPs) and IDP regions fail to form a stable structure, yet they exhibit biological activities. Their mobile flexibility and structural instability are encoded by their amino acid sequences. They recognize proteins, nucleic acids, and other types of partners; they accelerate interactions and chemical reactions between bound partners; and they help accommodate posttranslational modifications, alternative splicing, protein fusions, and insertions or deletions. Overall, IDP-associated biological activities complement those of structured proteins. Recently, there has been an explosion of studies on IDP regions and their functions, yet the discovery and investigation of these proteins have a long, mostly ignored history. Along with recent discoveries, we present several early examples and the mechanisms by which IDPs contribute to function, which we hope will encourage comprehensive discussion of IDPs and IDP regions in biochemistry textbooks. Finally, we propose future directions for IDP research.
引用
收藏
页码:553 / 584
页数:32
相关论文
共 266 条
[41]   The contribution of intrinsic disorder prediction to the elucidation of protein function [J].
Cozzetto, Domenico ;
Jones, David T. .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2013, 23 (03) :467-472
[42]   Fluorescence correlation spectroscopy shows that monomeric polyglutamine molecules form collapsed structures in aqueous solutions [J].
Crick, Scott L. ;
Jayaraman, Murali ;
Frieden, Carl ;
Wetzel, Ronald ;
Pappu, Rohit V. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (45) :16764-16769
[43]   Conformations of intrinsically disordered proteins are influenced by linear sequence distributions of oppositely charged residues [J].
Das, Rahul K. ;
Pappu, Rohit V. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (33) :13392-13397
[44]   Dynamic behavior of an intrinsically unstructured linker domain is conserved in the face of negligible amino acid sequence conservation [J].
Daughdrill, Gary W. ;
Narayanaswami, Pranesh ;
Gilmore, Sara H. ;
Belczyk, Agniezka ;
Brown, Celeste J. .
JOURNAL OF MOLECULAR EVOLUTION, 2007, 65 (03) :277-288
[45]   The C-terminal half of the anti-sigma factor, FlgM, becomes structured when bound to its target, sigma(28) [J].
Daughdrill, GW ;
Chadsey, MS ;
Karlinsey, JE ;
Hughes, KT ;
Dahlquist, FW .
NATURE STRUCTURAL BIOLOGY, 1997, 4 (04) :285-291
[46]   The SLiMDisc server: short, linear motif discovery in proteins [J].
Davey, Norman E. ;
Edwards, Richard J. ;
Shields, Denis C. .
NUCLEIC ACIDS RESEARCH, 2007, 35 :W455-W459
[47]   How viruses hijack cell regulation [J].
Davey, Norman E. ;
Trave, Gilles ;
Gibson, Toby J. .
TRENDS IN BIOCHEMICAL SCIENCES, 2011, 36 (03) :159-169
[48]   Casein micelles and their internal structure [J].
de Kruif, Cornelis G. ;
Huppertz, Thom ;
Urban, Volker S. ;
Petukhov, Andrei V. .
ADVANCES IN COLLOID AND INTERFACE SCIENCE, 2012, 171 :36-52
[49]   FlgM gains structure in living cells [J].
Dedmon, MM ;
Patel, CN ;
Young, GB ;
Pielak, GJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (20) :12681-12684
[50]   Mutual synergistic folding in recruitment of CBP/p300 by p160 nuclear receptor coactivators [J].
Demarest, SJ ;
Martinez-Yamout, M ;
Chung, J ;
Chen, HW ;
Xu, W ;
Dyson, HJ ;
Evans, RM ;
Wright, PE .
NATURE, 2002, 415 (6871) :549-553