A new prognostic risk model based on autophagy-related genes in kidney renal clear cell carcinoma

被引:11
作者
Wu, Guangzhen [1 ,2 ]
Xu, Yingkun [2 ]
Zhang, Huayu [3 ]
Ruan, Zihao [4 ]
Zhang, Peizhi [2 ]
Wang, Zicheng [5 ]
Gao, Han [5 ]
Che, Xiangyu [1 ]
Xia, Qinghua [2 ,5 ]
Chen, Feng [1 ]
机构
[1] Dalian Med Univ, Affiliated Hosp 1, Dept Urol, 222 Zhongshan Rd, Dalian 116011, Peoples R China
[2] Shandong Univ, Cheeloo Coll Med, Shandong Prov Hosp, Dept Urol, Jinan, Peoples R China
[3] Shandong Univ, Cheeloo Coll Med, Shandong Qianfoshan Hosp, Dept Plast & Reconstruct Surg, Jinan, Peoples R China
[4] Zhengzhou Univ, Dept Nursing, Zhengzhou, Peoples R China
[5] Shandong First Med Univ, Shandong Prov Hosp, Dept Urol, Jinan, Peoples R China
基金
中国国家自然科学基金;
关键词
Autophagy; kidney renal clear cell carcinoma; tcga; prognostic risk model; nomogram; ADVANCED SOLID TUMORS; PHASE-I TRIAL; TARGETED THERAPIES; CANCER; HYDROXYCHLOROQUINE; INHIBITION; EXPRESSION; PROTEIN; CLASSIFICATION; MODULATION;
D O I
10.1080/21655979.2021.1976050
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
This study aimed to explore the potential role of autophagy-related genes in kidney renal clear cell carcinoma (KIRC) and develop a new prognostic-related risk model. In our research, we used multiple bioinformatics methods to perform a pan-cancer analysis of the CNV, SNV, mRNA expression, and overall survival of autophagy-related genes, and displayed the results in the form of heat maps. We then performed cluster analysis and LASSO regression analysis on these autophagy-related genes in KIRC. In the cluster analysis, we successfully divided patients with KIRC into five clusters and found that there was a clear correlation between the classification and two clinicopathological features: tumor, and stage. In LASSO regression analysis, we used 13 genes to create a new prognostic-related risk model in KIRC. The model showed that the survival rate of patients with KIRC in the high-risk group was significantly lower than that in the low-risk group, and that there was a correlation between this grouping and the patients' metastasis, tumor, stage, grade, and fustat. The results of the ROC curve suggested that this model has good prediction accuracy. The results of multivariate Cox analysis show that the risk score of this model can be used as an independent risk factor for patients with KIRC. In summary, we believe that this research provides valuable data supporting future clinical treatment and scientific research.
引用
收藏
页码:7805 / 7819
页数:15
相关论文
共 73 条
[1]   LC3C mediates selective autophagy of the MET RTK, inhibiting cancer cell invasion [J].
Bell, Emily S. ;
Coelho, Paula Pinto ;
Park, Morag .
AUTOPHAGY, 2020, 16 (05) :959-961
[2]   Integrating Surgery with Targeted Therapies for Renal Cell Carcinoma: Current Evidence and Ongoing Trials [J].
Bex, Axel ;
Jonasch, Eric ;
Kirkali, Ziya ;
Mejean, Arnaud ;
Mulders, Peter ;
Oudard, Stephane ;
Patard, Jean-Jacques ;
Powles, Thomas ;
van Poppel, Hendrik ;
Wood, Christopher G. .
EUROPEAN UROLOGY, 2010, 58 (06) :819-828
[3]  
Bray F, 2018, CA-CANCER J CLIN, V68, P394, DOI [10.3322/caac.21492, 10.3322/caac.21609]
[4]   Metabolic stress regulates cytoskeletal dynamics and metastasis of cancer cells [J].
Caino, M. Cecilia ;
Chae, Young Chan ;
Vaira, Valentina ;
Ferrero, Stefano ;
Nosotti, Mario ;
Martin, Nina M. ;
Weeraratna, Ashani ;
O'Connell, Michael ;
Jernigan, Danielle ;
Fatatis, Alessandro ;
Languino, Lucia R. ;
Bosari, Silvano ;
Altieri, Dario C. .
JOURNAL OF CLINICAL INVESTIGATION, 2013, 123 (07) :2907-2920
[5]   A signature of 13 autophagy-related gene pairs predicts prognosis in hepatocellular carcinoma [J].
Cao, Jie ;
Wu, Lili ;
Lei, Xin ;
Shi, Keqing ;
Shi, Liang .
BIOENGINEERED, 2021, 12 (01) :697-707
[6]  
Cao QH, 2016, AM J TRANSL RES, V8, P3831
[7]   Autophagy and its role in gastric cancer [J].
Cao, Yijing ;
Luo, Yichen ;
Zou, Juan ;
Ouyang, Jun ;
Cai, Zhihong ;
Zeng, Xi ;
Ling, Hui ;
Zeng, Tiebing .
CLINICA CHIMICA ACTA, 2019, 489 :10-20
[8]   Early breast cancer: ESMO Clinical Practice Guidelines for diagnosis, treatment and follow-up [J].
Cardoso, F. ;
Kyriakides, S. ;
Ohno, S. ;
Penault-Llorca, F. ;
Poortmans, P. ;
Rubio, I. T. ;
Zackrisson, S. ;
Senkus, E. .
ANNALS OF ONCOLOGY, 2019, 30 (08) :1194-1220
[9]   Autophagy: in sickness and in health [J].
Cuervo, AM .
TRENDS IN CELL BIOLOGY, 2004, 14 (02) :70-77
[10]   Autophagy Function and Dysfunction: Potential Drugs as Anti-Cancer Therapy [J].
Cuomo, Francesca ;
Altucci, Lucia ;
Cobellis, Gilda .
CANCERS, 2019, 11 (10)