A quantitative analysis of kinase inhibitor selectivity

被引:1995
作者
Karaman, Mazen W. [1 ]
Herrgard, Sanna [1 ]
Treiber, Daniel K. [1 ]
Gallant, Paul [1 ]
Atteridge, Corey E. [1 ]
Campbell, Brian T. [1 ]
Chan, Katrina W. [1 ]
Ciceri, Pietro [1 ]
Davis, Mindy I. [1 ]
Edeen, Philip T. [1 ]
Faraoni, Raffaella [1 ]
Floyd, Mark [1 ]
Hunt, Jeremy P. [1 ]
Lockhart, Daniel J. [1 ]
Milanov, Zdravko V. [1 ]
Morrison, Michael J. [1 ]
Pallares, Gabriel [1 ]
Patel, Hitesh K. [1 ]
Pritchard, Stephanie [1 ]
Wodicka, Lisa M. [1 ]
Zarrinkar, Patrick P. [1 ]
机构
[1] Ambit Biosci, San Diego, CA 92121 USA
关键词
D O I
10.1038/nbt1358
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Kinase inhibitors are a new class of therapeutics with a propensity to inhibit multiple targets(1,2). The biological consequences of multi-kinase activity are poorly defined, and an important step toward understanding the relationship between selectivity, efficacy and safety is the exploration of how inhibitors interact with the human kinome(2-4). We present interaction maps for 38 kinase inhibitors across a panel of 317 kinases representing >50% of the predicted human protein kinome. The data constitute the most comprehensive study of kinase inhibitor selectivity to date and reveal a wide diversity of interaction patterns. To enable a global analysis of the results, we introduce the concept of a selectivity score as a general tool to quantify and differentiate the observed interaction patterns. We further investigate the impact of panel size and find that small assay panels do not provide a robust measure of selectivity.
引用
收藏
页码:127 / 132
页数:6
相关论文
共 33 条
[1]   Potential benefits of the irreversible pan-erbB inhibitor, CI-1033, in the treatment of breast cancer [J].
Allen, LF ;
Lenehan, PF ;
Eiseman, IA ;
Elliott, WL ;
Fry, DW .
SEMINARS IN ONCOLOGY, 2002, 29 (03) :11-21
[2]   Roscovitine targets, protein kinases and pyridoxal kinase [J].
Bach, S ;
Knockaert, M ;
Reinhardt, J ;
Lozach, O ;
Schmitt, S ;
Baratte, B ;
Koken, M ;
Coburn, SP ;
Tang, L ;
Jiang, T ;
Liang, DC ;
Galons, H ;
Dierick, JF ;
Pinna, LA ;
Meggio, F ;
Totzke, F ;
Schächtele, C ;
Lerman, AS ;
Carnero, A ;
Wan, YQ ;
Gray, N ;
Meijer, L .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (35) :31208-31219
[3]   The specificities of protein kinase inhibitors: an update [J].
Bain, J ;
McLauchlan, H ;
Elliott, M ;
Cohen, P .
BIOCHEMICAL JOURNAL, 2003, 371 :199-204
[4]   Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors [J].
Bantscheff, Marcus ;
Eberhard, Dirk ;
Abraham, Yann ;
Bastuck, Sonja ;
Boesche, Markus ;
Hobson, Scott ;
Mathieson, Toby ;
Perrin, Jessica ;
Raida, Manfred ;
Rau, Christina ;
Reader, Valerie ;
Sweetman, Gavain ;
Bauer, Andreas ;
Bouwmeester, Tewis ;
Hopf, Carsten ;
Kruse, Ulrich ;
Neubauer, Gitte ;
Ramsden, Nigel ;
Rick, Jens ;
Kuster, Bernhard ;
Drewes, Gerard .
NATURE BIOTECHNOLOGY, 2007, 25 (09) :1035-1044
[5]   Targeting tyrosine kinases in cancer: The second wave [J].
Baselga, Jose .
SCIENCE, 2006, 312 (5777) :1175-1178
[6]  
Buchdunger E, 2000, J PHARMACOL EXP THER, V295, P139
[7]   Inhibition of drug-resistant mutants of ABL, KIT, and EGF receptor kinases [J].
Carter, TA ;
Wodicka, LM ;
Shah, NP ;
Velasco, AM ;
Fabian, MA ;
Treiber, DK ;
Milanov, ZV ;
Atteridge, CE ;
Biggs, WH ;
Edeen, PT ;
Floyd, M ;
Ford, JM ;
Grotzfeld, RM ;
Herrgard, S ;
Insko, DE ;
Mehta, SA ;
Patel, HK ;
Pao, W ;
Sawyers, CL ;
Varmus, H ;
Zarrinkar, PP ;
Lockhart, DJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (31) :11011-11016
[8]   Molecular basis for specificity in the druggable kinome: sequence-based analysis [J].
Chen, Jianping ;
Zhang, Xi ;
Fernandez, Ariel .
BIOINFORMATICS, 2007, 23 (05) :563-572
[9]   SB-203580 IS A SPECIFIC INHIBITOR OF A MAP KINASE HOMOLOG WHICH IS STIMULATED BY CELLULAR STRESSES AND INTERLEUKIN-1 [J].
CUENDA, A ;
ROUSE, J ;
DOZA, YN ;
MEIER, R ;
COHEN, P ;
GALLAGHER, TF ;
YOUNG, PR ;
LEE, JC .
FEBS LETTERS, 1995, 364 (02) :229-233
[10]   Sorafenib in advanced clear-cell renal-cell carcinoma [J].
Escudier, Bernard ;
Eisen, Tim ;
Stadler, Walter M. ;
Szczylik, Cezary ;
Oudard, Stephane ;
Siebels, Michael ;
Negrier, Sylvie ;
Chevreau, Christine ;
Solska, Ewa ;
Desai, Apurva A. ;
Rolland, Frederic ;
Demkow, Tomasz ;
Hutson, Thomas E. ;
Gore, Martin ;
Freeman, Scott ;
Schwartz, Brian ;
Shan, Minghua ;
Simantov, Ronit ;
Bukowski, Ronald M. .
NEW ENGLAND JOURNAL OF MEDICINE, 2007, 356 (02) :125-134