Calculation of the hydrogen binding energies of complexes between formamide and adenine-thymine pair

被引:0
|
作者
Duan, Chun-sheng [1 ,2 ]
Fu, Hui [1 ]
You, Jin-mao [3 ]
Ma, Ke-sheng [2 ]
Zhou, Zheng-yu [1 ,3 ]
机构
[1] China Univ Petr, Coll Chem & Chem Engn, Dongying 257061, Shangdong, Peoples R China
[2] Qingdao Univ, Normal Coll, Dept Chem, Qingdao 266071, Shandong, Peoples R China
[3] Qufu Normal Univ, Dept Chem, Qufu 273165, Shandong, Peoples R China
基金
中国国家自然科学基金;
关键词
DENSITY-FUNCTIONAL THEORY; DNA-BASE PAIRS; BONDING INTERACTION; MICROWAVE-SPECTRUM; WATSON-CRICK; WATER; ACID; ASSOCIATION;
D O I
10.1134/S0036024410130169
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The hydrogen bonding of complexes formed between formamide and adenine-thymine base pair has been completely investigated in the present study. In order to gain deeper insight into structure, charge distribution, and energies of complexes, we have investigated them using density functional theory at 6-311++G(d, p), 6-31G, 6-31+G(d), and 6-31++G(d, p) level. Seven stable cyclic structures (ATF1-ATF7) being involved in the interaction has been found on the potential energy surface. In addition, for further correction of interaction energies between adenine-thymine and formamide, the basis set superposition error associated with the hydrogen bond energy has been computed via the counterpoise method using the individual bases as fragments. The infrared spectrum frequencies, IR intensities and the vibrational frequency shifts are reported.
引用
收藏
页码:2300 / 2305
页数:6
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