Investigating neuronal activity by SPYCODE multi-channel data analyzer

被引:99
作者
Bologna, Luca Leonardo [1 ,3 ]
Pasquale, Valentina [1 ]
Garofalo, Matteo [1 ]
Gandolfo, Mauro [2 ]
Baljon, Pieter Laurens [2 ,4 ,5 ]
Maccione, Alessandro [1 ]
Martinoia, Sergio [1 ,2 ]
Chiappalone, Michela [1 ]
机构
[1] Italian Inst Technol IIT, Dept Neurosci & Brain Technol, I-16163 Genoa, Italy
[2] Univ Genoa, Dept Biophys & Elect Engn DIBE, Neuroengn & Bionano Technol Grp NBT, I-16145 Genoa, Italy
[3] Univ Paris 06, Lab Neurobiol Adapt Proc, F-75005 Paris, France
[4] CALTECH, Broad Fellows Program, Pasadena, CA 91125 USA
[5] CALTECH, Div Biol, Pasadena, CA 91125 USA
关键词
Micro-electrode array; Cell culture; Batch processing; Connectivity; IN-VITRO; INFORMATION-THEORY; DEVELOPING NETWORKS; CORTICAL NETWORKS; ACTIVITY PATTERNS; BURSTS; IDENTIFICATION; AVALANCHES; PLASTICITY; DYNAMICS;
D O I
10.1016/j.neunet.2010.05.002
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Multi-channel acquisition from neuronal networks, either in vivo or in vitro, is becoming a standard in modern neuroscience in order to infer how cell assemblies communicate. In spite of the large diffusion of micro-electrode-array-based systems, researchers usually find it difficult to manage the huge quantity of data routinely recorded during the experimental sessions. In fact, many of the available open-source toolboxes still lack two fundamental requirements for treating multi-channel recordings: (i) a rich repertoire of algorithms for extracting information both at a single channel and at the whole network level; (ii) the capability of autonomously repeating the same set of computational operations to 'multiple' recording streams (also from different experiments) and without a manual intervention. The software package we are proposing, named SPYCODE, was mainly developed to respond to the above constraints and generally to offer the scientific community a 'smart' tool for multi-channel data processing. (C) 2010 Elsevier Ltd. All rights reserved.
引用
收藏
页码:685 / 697
页数:13
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